PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31798.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 20070.9 Da PI: 9.7165 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.4 | 1.5e-19 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksg 81 +p+Gfr +Pt+eel+++yL++k++g +l+ v +++++y k ePwd+ ++++ e+ke+yfF + ++ + + +r +++g mrna31798.1-v1.0-hybrid 11 VPVGFRSKPTEEELLCYYLRRKIRGLRLPQGVVHHNCNVYgKKEPWDIWEAYRDpsdpETKELYFFRDEPRRVFSCSTIRR-VDTG 95 599************************9996667888999456*****743333344477799******999987776666.588* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 W+ k+v++ +++++g ++t+v+ + + + + W+++e +l mrna31798.1-v1.0-hybrid 96 NWRGENLRKKVHAYgSDRVIGWRRTFVYTN--RDSVQDGCWLINELEL 141 ******9999999867788*********94..4444689999999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-23 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.88 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-14 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MAVPMQGVNH VPVGFRSKPT EEELLCYYLR RKIRGLRLPQ GVVHHNCNVY GKKEPWDIWE 60 AYRDPSDPET KELYFFRDEP RRVFSCSTIR RVDTGNWRGE NLRKKVHAYG SDRVIGWRRT 120 FVYTNRDSVQ DGCWLINELE LHESLFPSKD KRNSYVLCIL TKIDKKGKH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31798.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300917.1 | 1e-124 | PREDICTED: NAC domain-containing protein 43-like | ||||
STRING | XP_004300917.1 | 1e-124 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 3e-17 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna31798.1-v1.0-hybrid |