PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31678.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 24100.2 Da PI: 9.2131 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 142 | 167 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ F + n krHi H mrna31678.1-v1.0-hybrid 142 FKCPieNCKSEFAFQGNVKRHIVEfH 167 89*******************98777 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00076 | 182 | 202 | 1 | 19 |
EEET..TTTEEESSHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrH 19 ++C+ Cgk+F s L++H mrna31678.1-v1.0-hybrid 182 HVCQepGCGKVFQFASKLRKH 202 689999*************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.39E-5 | 17 | 42 | No hit | No description |
PROSITE profile | PS50157 | 8.621 | 19 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 32 | 19 | 42 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 139 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.6E-5 | 140 | 168 | No hit | No description |
SMART | SM00355 | 0.96 | 142 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 142 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-7 | 177 | 206 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.39E-5 | 177 | 206 | No hit | No description |
SMART | SM00355 | 0.5 | 182 | 206 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 182 | 206 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 184 | 206 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVQGEAEETR PIFRDIRRYY CKNCGICRSK KTLIASHMLA QHKALDPTKE LQNARGYGLK 60 WTSTRGETSC EAPSSDPQSR RVTIEREVLD PKQRNPKCET VRLEWTSTRG ETSCEAPSSD 120 PQSHTKKGSF EPSSSSAPRK AFKCPIENCK SEFAFQGNVK RHIVEFHSED RPSTSVEGQK 180 EHVCQEPGCG KVFQFASKLR KHDGSHGRVL FLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31678.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287098.1 | 1e-71 | PREDICTED: transcription factor IIIA-like isoform X1 | ||||
STRING | XP_004287098.1 | 4e-71 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 4e-19 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | mrna31678.1-v1.0-hybrid |