PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30749.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 338aa    MW: 38160.6 Da    PI: 5.9554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30749.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52131421129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              lppGfrFhP+deel+ +yL++kv +++++    i++v d++k+ePw+Lp+k+k +ekewy Fs rd+ky+tg r+nratk+gyWka
  mrna30749.1-v1.0-hybrid  13 LPPGFRFHPSDEELIRYYLHNKVINSNFTS-GPISQVvDLNKCEPWQLPEKAKMGEKEWYMFSLRDQKYPTGLRANRATKAGYWKA 97 
                              79*************************999.6677666***********99999******************************** PP

                      NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              tgkd+e++s+ + +l+g+kktLvfy+grapkg++++Wvmheyrle
  mrna30749.1-v1.0-hybrid  98 TGKDREIYSSkSCSLIGMKKTLVFYHGRAPKGVRSNWVMHEYRLE 142
                              ********9845567****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-574161IPR003441NAC domain
PROSITE profilePS5100555.06613161IPR003441NAC domain
PfamPF023651.1E-2614141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDLMNLHEYD NQLPPGFRFH PSDEELIRYY LHNKVINSNF TSGPISQVVD LNKCEPWQLP  60
EKAKMGEKEW YMFSLRDQKY PTGLRANRAT KAGYWKATGK DREIYSSKSC SLIGMKKTLV  120
FYHGRAPKGV RSNWVMHEYR LEGLFASQEW NQWILSRVFQ KAMKINEPEC KETRMIGSGG  180
YSAEPSSSSS SSVSLPPLFD SSPYYPTNAS LTDRDSCSHD NRTPMEHVSC FSTNSGTSDH  240
LMTSLDLAPL PQHQTSSLHG FGGLSDFPSS LGSLEENLQL PFLFSQGMQP HQPYYSSTTG  300
SFEFDLGDWS SLGNWRAATA EEPEALAPAE ADYMWTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461316117165NO APICAL MERISTEM PROTEIN
1ut4_B3e-461316117165NO APICAL MERISTEM PROTEIN
1ut7_A3e-461316117165NO APICAL MERISTEM PROTEIN
1ut7_B3e-461316117165NO APICAL MERISTEM PROTEIN
3swm_A4e-461316120168NAC domain-containing protein 19
3swm_B4e-461316120168NAC domain-containing protein 19
3swm_C4e-461316120168NAC domain-containing protein 19
3swm_D4e-461316120168NAC domain-containing protein 19
3swp_A4e-461316120168NAC domain-containing protein 19
3swp_B4e-461316120168NAC domain-containing protein 19
3swp_C4e-461316120168NAC domain-containing protein 19
3swp_D4e-461316120168NAC domain-containing protein 19
4dul_A3e-461316117165NAC domain-containing protein 19
4dul_B3e-461316117165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30749.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460337.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A2P6QAJ91e-171A0A2P6QAJ9_ROSCH; Putative transcription factor NAM family
STRINGXP_004295380.11e-169(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.14e-78NAC family protein