PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30667.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 29710.7 Da PI: 6.1361 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00051 | 48 | 85 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ +++ +Lr+l+ ka +i+ A+ YI +Lq mrna30667.1-v1.0-hybrid 48 NAERKRRAKLSDRLLKLRSLMNKA-----------TIVDDAITYIYELQ 85 58*****************98555...........88888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-11 | 42 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.56E-8 | 43 | 88 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-7 | 44 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-4 | 47 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEFVGSPLDE LYLSPDQLED NSRGGRMGRR RYNDVVDGPP IYKSKNLNAE RKRRAKLSDR 60 LLKLRSLMNK ATIVDDAITY IYELQKEVNM LQEQLFEMEA LSSLEVPEPK PRKKETDAAE 120 EMKKSGIQAD VSVTQIDGDK LWIKAVFAKK RGGFTKLIEA MTEFGFELND TSVTTSNGAM 180 LVSSWVTELQ MNVNIFQDKV FGMEAASFAR ALDRAHRNNE GKTENTAISV TTERAPLESD 240 PPRPLNTPRG GPSGRDKFQF FFC* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00091 | SELEX | Transfer from AT4G21330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30667.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460361.1 | 1e-122 | PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1 | ||||
TrEMBL | A0A2P6Q338 | 1e-100 | A0A2P6Q338_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004295403.1 | 1e-122 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 8e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna30667.1-v1.0-hybrid |