PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30478.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 578aa    MW: 63318.5 Da    PI: 7.7677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30478.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.8e-065035441455
                              HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              d+i +  ++Lr+l+P+    +s  +s + +L++++ YI++Lq
  mrna30478.1-v1.0-hybrid 503 DQIIELVSKLRQLVPETRDRRSDQVSASKVLQETCSYIRNLQ 544
                              56667779********66899999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139665.7E-19234302IPR026960Reverse transcriptase zinc-binding domain
CDDcd062221.13E-8390473No hitNo description
PfamPF134564.3E-7391454No hitNo description
PROSITE profilePS508889.47489543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-7501562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-4501548No hitNo description
Gene3DG3DSA:4.10.280.106.3E-7503558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSPTTPSLTK CTGGRGGRRG RRVGEEGDCD DDGEVVDTEV EMVLADTDGG VREGFRFGKG  60
RAVDELGPWA ALGEAVADSV GDVVDEGAEE AMVVEIGRTV DIVGGGGHDS DGEGGGGHYC  120
PRSPVNGRQS PINDHRSPVN SPRNPGHLPP EFGQRSLKPG QRPPESGQRS REPGQQSREP  180
DQRPPKSVNG LRSPINCSRS PVNDPRSPVK DCRSPVNVIG RGNPFDNYSL HSNSKIMNVI  240
WKLNMPPRAK NFAWLLARGR LKTRATLARY SNTISSSCTL CSNGEEDLNH LFFFCPFAVS  300
IWNMAGRKKT KKQLKTAFSF ARNYGRAETI IFLEDARPTP TLLCMLLLLL VMITEARIRL  360
LEATRPTLMD PSFQQVPLSN VPHPCNLVKL NFDGSVCHNK KAVVGFVIRD HEGNPNLVGS  420
RCVGNSSVLS AECSALRDGL FHALCNDIRR VQFEEITFKY VLQEANFVAD TMASLGYQEL  480
VRSIMSSGRS SSQSSGSPSI RDDQIIELVS KLRQLVPETR DRRSDQVSAS KVLQETCSYI  540
RNLQREVEDL SERLSQLLAT IDADSAEAAI FRSLIMQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305312GRKKTKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30478.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-30bHLH family protein