PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30456.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 495aa    MW: 55102.9 Da    PI: 10.6382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30456.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.7e-08942236
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                              rW t++++ll+ av+++G+++W+++++++   Rt
  mrna30456.1-v1.0-hybrid  9 SRWGTWLELLLAGAVTRYGTRDWTLVSAELR-ART 42
                             59****************************9.888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.8E-51043IPR001005SANT/Myb domain
SuperFamilySSF473705.76E-19282389IPR001487Bromodomain
SMARTSM002978.9E-17285389IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.2E-16285390IPR001487Bromodomain
CDDcd043693.68E-8290384No hitNo description
PfamPF004391.8E-12294373IPR001487Bromodomain
PROSITE profilePS5001410.001300370IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MVAEAIGQSR WGTWLELLLA GAVTRYGTRD WTLVSAELRA RTVCPYAFTP EVCKAKYEDL  60
RKRYSGCKAW FEELRKKRME ELRQALKQSE NSIGVRCPKA SAYAFVLIFT QCGCYRSLES  120
KLESLKADKR VGGCMNNGSG QTESPIPYQK LEGRYPSTKE IHKDEPSAGS FTYEALTSCS  180
PECQIPATVS AEDADTKREV SQPSMREKIS MGAFFGGLGG TLRKRRGKRK RKDCSRDVKE  240
ASVGESGFLD SIDTVTGLRR IEHLTSDCRE ALGSSGAIDW NRGLTEDGTN NLLDVFNKIL  300
EHKSASVFRH RLDSQKRRRY KRMIHRHMDF DTIGSRIASN YVMSVKELFR DLLLLANNAL  360
VFYSKSTREY KSALLLRDLT TKTLRQHLKD SISKKAASVN LSSNTLVCNP PAKPRGSRPG  420
NRKLSRKATN AGKTPARTSN KSKKAGNANA DSSPSVESCA VTKRTSGHPR KVGRKPVGQQ  480
NVVPVKGRKR GRTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16077RKRYSGCKAWFEELRKKR
2224232RRGKRKRKD
3314321QKRRRYKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30456.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460266.10.0PREDICTED: uncharacterized protein LOC105350278 isoform X1
TrEMBLA0A2P6Q3N90.0A0A2P6Q3N9_ROSCH; Putative transcription factor MYB-related family
STRINGEMJ132800.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-13DNA-binding bromodomain-containing protein