PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30180.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 429aa MW: 47666.3 Da PI: 6.6208

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30180.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	79.5	6e-25	291	398	3	113
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +lL +cA+av+s d +++++lL++++e++ p+gd++qRla+yf+++L+arl++ ++ y+ +++ +ts ++ l a++l++ +s mrna30180.1-v1.0-hybrid 291 TLLNQCAQAVASYDRHAVNELLKQIREHSCPHGDATQRLAHYFANGLEARLHGAMTPSYSPVASMQTS---AADILRAHRLYVTAS 373 689************************************************999999888888888...9********** PP GRAS 89 PilkfshltaNqaIleavegeervH 113 P+ k+s+++aN++I+e ++ ++ H mrna30180.1-v1.0-hybrid 374 PLKKMSNFVANSTIMELAKDATSYH 398 ***************99988777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.71	263	428	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-22	291	398	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDTLLERLYG SPSVSSNQSL ANGFQVNHVS TNPLFLPTNF NHPNHPSTSL SLGSGEDTCD 60 NNDCNSPMLK YISDILLEED LEGKPCMLQN CLALQAAEKS FYDLLNPKYR PSFNQSPLSM 120 YQSFENSDED STQSCHSSIG SITPVIPKKN PFHVQSSFAE STSDTVLVSR SLSQMKSLGI 180 LGVREAIRKV VYEPENDSYS STNGSKGKKN HQREDGSNPY NGRSSKQAAA SAQESEPQEM 240 FEKVFLCQGE NHESECCSPR EFMKTEESGK LQPRRQPRGS KKQNNIVDVC TLLNQCAQAV 300 ASYDRHAVNE LLKQIREHSC PHGDATQRLA HYFANGLEAR LHGAMTPSYS PVASMQTSAA 360 DILRAHRLYV TASPLKKMSN FVANSTIMEL AKDATSYHKD FRIDEEGEWM LQGWKGRIIM 420 ALSFWKPA*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDTLLERLYG SPSVSSNQSL ANGFQVNHVS TNPLFLPTNF NHPNHPSTSL SLGSGEDTCD  60
NNDCNSPMLK YISDILLEED LEGKPCMLQN CLALQAAEKS FYDLLNPKYR PSFNQSPLSM  120
YQSFENSDED STQSCHSSIG SITPVIPKKN PFHVQSSFAE STSDTVLVSR SLSQMKSLGI  180
LGVREAIRKV VYEPENDSYS STNGSKGKKN HQREDGSNPY NGRSSKQAAA SAQESEPQEM  240
FEKVFLCQGE NHESECCSPR EFMKTEESGK LQPRRQPRGS KKQNNIVDVC TLLNQCAQAV  300
ASYDRHAVNE LLKQIREHSC PHGDATQRLA HYFANGLEAR LHGAMTPSYS PVASMQTSAA  360
DILRAHRLYV TASPLKKMSN FVANSTIMEL AKDATSYHKD FRIDEEGEWM LQGWKGRIIM  420
ALSFWKPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30180.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461321.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A314YZ14	1e-149	A0A314YZ14_PRUYE; Scarecrow-like protein 11
STRING	XP_004295969.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-43	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna30180.1-v1.0-hybrid