PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30178.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 364aa MW: 40345.4 Da PI: 5.8435

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30178.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	48.4	1.7e-15	262	329	2	69
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset 69 ++ L +cA+av+s d+ a++lL ++++++spdg ++qRla+yf+++L+arl++ + ++ l +++t mrna30178.1-v1.0-hybrid 262 TTMLNQCAQAVASYDQGTASELLRKIRQHSSPDGHATQRLAHYFANGLEARLTGVRTPSFSPLFSRHT 329 5789*************************************************955555555544444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.572	235	363	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-13	262	329	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MERSSFGHAL TSVASNPNLG DRFQMHHEST NTLIHPSDSE EATFDINYFN NPTLKSISDI 60 LLDGDLEGKN CMLQDSLALQ AAEKTFYDAL YPKDPPFSNQ LPLPCQNSEY SQNDSIHSSL 120 VESFSDTLTV SDSLFKMKSL GQAGEASKFR TNGNFDINDK ERYQTNGLKG KKNHQREDEQ 180 HPEEGRSSKQ SVVSADDSVP QEIFDKVLLC QGDHHEEWGS CTPHCSTKRE GTEKLQQNRQ 240 SKGSKTNRSK QQNKDEEAVD LTTMLNQCAQ AVASYDQGTA SELLRKIRQH SSPDGHATQR 300 LAHYFANGLE ARLTGVRTPS FSPLFSRHTS AAEILLAFEM GIGCCMDGKD GSSRLFHFGN 360 LPS*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MERSSFGHAL TSVASNPNLG DRFQMHHEST NTLIHPSDSE EATFDINYFN NPTLKSISDI  60
LLDGDLEGKN CMLQDSLALQ AAEKTFYDAL YPKDPPFSNQ LPLPCQNSEY SQNDSIHSSL  120
VESFSDTLTV SDSLFKMKSL GQAGEASKFR TNGNFDINDK ERYQTNGLKG KKNHQREDEQ  180
HPEEGRSSKQ SVVSADDSVP QEIFDKVLLC QGDHHEEWGS CTPHCSTKRE GTEKLQQNRQ  240
SKGSKTNRSK QQNKDEEAVD LTTMLNQCAQ AVASYDQGTA SELLRKIRQH SSPDGHATQR  300
LAHYFANGLE ARLTGVRTPS FSPLFSRHTS AAEILLAFEM GIGCCMDGKD GSSRLFHFGN  360
LPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30178.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461320.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A2P6QJ23	1e-179	A0A2P6QJ23_ROSCH; Putative transcription factor GRAS family
STRING	EMJ12524	1e-109	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	2e-39	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna30178.1-v1.0-hybrid