PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30177.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 419aa MW: 46118.1 Da PI: 4.9299

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30177.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	52.5	9.4e-17	326	393	3	70
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 + L++cA+av++ d++ a++lL++++++++p+gd++qRla+yf+ +L++rla+ + y+ l + + s mrna30177.1-v1.0-hybrid 326 TMLTQCAQAVANFDQRTASELLKQIRQHSTPHGDATQRLAHYFADGLQTRLAGAKTPSYSPLVSVQIS 393 689**************************************************888888888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.86	298	418	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-14	326	393	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDTLHRYSVP EFKYDHGPVS VCPNPIVNGF KVNHESTNPV LPASRSELSS DSSNEGSEVD 60 GLDINDCNHP VLKYISDILL EEDLEGKPCM LHDCLALQTA EKSFYDALVQ KDPPLPNQPS 120 SSSVHQSSES SDDDSPQSFQ SSNRSFPVKT DWVWDPAFSP VQSSLFESFS NTLLVSDSIS 180 KMQSLGNFGG VGEASKFLSN AKLEMVDLDR FQLMPQGPVS SESGADGYSF TNGSKGKKTH 240 QREDSHFLEE EERSSKQSAA TGDDFEPQEL FDKVLLCPHE NHESELCADD ESFKTEGNGK 300 LQRKKQPKGS KAKRQNNIGE VVDLCTMLTQ CAQAVANFDQ RTASELLKQI RQHSTPHGDA 360 TQRLAHYFAD GLQTRLAGAK TPSYSPLVSV QISAAEILKA YQGWKGRTIM ALSFWKPT*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDTLHRYSVP EFKYDHGPVS VCPNPIVNGF KVNHESTNPV LPASRSELSS DSSNEGSEVD  60
GLDINDCNHP VLKYISDILL EEDLEGKPCM LHDCLALQTA EKSFYDALVQ KDPPLPNQPS  120
SSSVHQSSES SDDDSPQSFQ SSNRSFPVKT DWVWDPAFSP VQSSLFESFS NTLLVSDSIS  180
KMQSLGNFGG VGEASKFLSN AKLEMVDLDR FQLMPQGPVS SESGADGYSF TNGSKGKKTH  240
QREDSHFLEE EERSSKQSAA TGDDFEPQEL FDKVLLCPHE NHESELCADD ESFKTEGNGK  300
LQRKKQPKGS KAKRQNNIGE VVDLCTMLTQ CAQAVANFDQ RTASELLKQI RQHSTPHGDA  360
TQRLAHYFAD GLQTRLAGAK TPSYSPLVSV QISAAEILKA YQGWKGRTIM ALSFWKPT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30177.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461319.1	0.0	PREDICTED: scarecrow-like protein 33
TrEMBL	A0A2P6QIY9	0.0	A0A2P6QIY9_ROSCH; Putative transcription factor GRAS family
STRING	XP_004295969.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	4e-49	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna30177.1-v1.0-hybrid