PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30172.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 567aa    MW: 62822.5 Da    PI: 5.1338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30172.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.35.2e-17236327293
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              + lL++cAeav+ +d   a++lL+++++++sp gd +qRl ++f++AL+ rla+++sely +l+++++s+ + s+   al +++  
  mrna30172.1-v1.0-hybrid 236 RCLLISCAEAVAVDDRGTASELLKQIRQHSSPFGDYTQRLSHCFVNALEVRLAGTGSELYTTLATKRASPADFSKFYRALIAYHPK 321
                              569***************************************************************99977766666665555555 PP

                     GRAS  88 sPilkf 93 
                              s ++ f
  mrna30172.1-v1.0-hybrid 322 SNWVSF 327
                              555555 PP
2GRAS48.41.7e-15466545181
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaal 81 
                              l++lL+ cA+avs++d++  ++lL+++++++sp gd  qRla++f+++L+ar+a+    +++++a  +s+++    +e+l a+
  mrna30172.1-v1.0-hybrid 466 LRNLLILCAQAVSTNDFRTSTELLKQIRQNSSPFGDGSQRLAHCFANGLEARMAGagIRTQISHAAVASKQK---AVEKLRAY 545
                              6899**************************************************943445555555444444...66666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.656209327IPR005202Transcription factor GRAS
PfamPF035141.8E-14236327IPR005202Transcription factor GRAS
PROSITE profilePS5098513.161440566IPR005202Transcription factor GRAS
PfamPF035146.0E-13466545IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDSPFCGYPN FNDQTLLLDM LNEYPSVDPF DHLSFLDPNP MNSALSSSFS PVGDDGEFSN  60
TVIKHINQVL MEEDMEPTPC LFPDPLVLQA TEESLCEITG ARKFSTSLDQ NPLWVDQNEY  120
GNGNGMVGSY RSELMVPDEV SKKELLVQFD RGAEDGSKFL PRGQLITAEG NKPYTVANSK  180
AGNVVVRTQK NGSEHVRVGS RGKNSHLREE IELEDGRNQK ACGMKRGNKK EVIDLRCLLI  240
SCAEAVAVDD RGTASELLKQ IRQHSSPFGD YTQRLSHCFV NALEVRLAGT GSELYTTLAT  300
KRASPADFSK FYRALIAYHP KSNWVSFNFV YFITMDPRFY ENPNFNDQTI LPDMLNEYPS  360
SEPLKDLSFL DPNPSNSALS SISSPEGDEF SDSVLKYINQ VLMEEDMESK PCMFHDPLVL  420
QATEESLYEN EKSKNSQANG QPQTSNGGGE KSRAKKQGKK KETVDLRNLL ILCAQAVSTN  480
DFRTSTELLK QIRQNSSPFG DGSQRLAHCF ANGLEARMAG AGIRTQISHA AVASKQKAVE  540
KLRAYQDGKV ELSMLLLVGC LHRSPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30172.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294644.10.0PREDICTED: scarecrow-like protein 14
TrEMBLA0A2P6QIZ91e-140A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family
STRINGXP_004295967.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.16e-30GRAS family protein