 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna29771.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
| Family | ARF | ||||||||
| Protein Properties | Length: 759aa MW: 83524.9 Da PI: 6.6382 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 77.6 | 1.4e-24 | 144 | 245 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80
f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v
mrna29771.1-v1.0-hybrid 144 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAV 228
99****************************963.3445679********************************************* PP
EEEE-SSSEE..EEEEE-S CS
B3 81 vFkldgrsefelvvkvfrk 99
+F + +++el+++v+r+
mrna29771.1-v1.0-hybrid 229 LFL--RGEDGELRLGVRRA 245
***..449999*****996 PP
| |||||||
| 2 | Auxin_resp | 111.5 | 8.5e-37 | 272 | 351 | 3 | 82 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
+a+stk++F+ +YnPras+seF+++++k++++l +++++GmRfkm+feted++e+r++G+v+g+s+ldp+rWp+SkW+++
mrna29771.1-v1.0-hybrid 272 DAISTKTAFNAYYNPRASSSEFIIPFRKFLRSLGHSFCAGMRFKMRFETEDAAEQRYTGLVTGISELDPLRWPGSKWKCV 351
789***************************************************************************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 135 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.83E-42 | 138 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.46E-22 | 142 | 244 | No hit | No description |
| Pfam | PF02362 | 1.7E-22 | 144 | 245 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 6.7E-23 | 144 | 246 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.366 | 144 | 246 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.2E-31 | 272 | 351 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0010050 | Biological Process | vegetative phase change | ||||
| GO:0010158 | Biological Process | abaxial cell fate specification | ||||
| GO:0010582 | Biological Process | floral meristem determinacy | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 759 aa Download sequence Send to blast |
MAGLIDLNST TEEEEETPSS GSSSNSSGSN GLISGSVCLE LWHACAGPLI SLPKKGSVVV 60 YLPQGHLEQV SDFPASVYDL PAHLFCRVLD VKLHAESGSD EVYAQVQLVP ESEEFEHKLG 120 ERETVADGDE DAEGSEKSTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP 180 SQELVAKDLH GLEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL 240 GVRRAAQVKA SATYPTPGSQ HLNYNSVTEL VDAISTKTAF NAYYNPRASS SEFIIPFRKF 300 LRSLGHSFCA GMRFKMRFET EDAAEQRYTG LVTGISELDP LRWPGSKWKC VAVRWDDIDT 360 SKQHGRVSPW EIEPSGSISN SSGLMASGLK RSRMGLSAEK QEFPVPHGIG ASDFGESLRF 420 QKVLQGQEVS GFDTPFGSIG GQNQHPSESR RVFHGSIGSR GNDLRNSFVN SEIASKGFGE 480 SFRFQKVLQG QEIFPSTPYG RAPATNEARE YGCPGIFDGF QVPSFRNGWS TMMQGSNTPM 540 HRAAPVQVSS PSSVLMFQQA INAGAEFNSV YNGHNQQEQR IMQRTHSESD GGKQTSASFC 600 ERSFTREGHG GMNSFDQHGI SHPPLLSQSS LRGSQDMVSS CKSSCRLFGF SLSEETHAPN 660 KVDNSTSVTS ALESGASMFP NVEPRFHSKP PSMNGHLTGV EKGWKVVYKD SDNDTELVVT 720 FHPEMLPQYY VRNTRLEDVV FAPEDFRRSS ITSKRSIL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldv_A | 1e-115 | 21 | 381 | 2 | 361 | Auxin response factor 1 |
| 4ldw_A | 1e-115 | 21 | 381 | 2 | 361 | Auxin response factor 1 |
| 4ldw_B | 1e-115 | 21 | 381 | 2 | 361 | Auxin response factor 1 |
| 4ldy_A | 1e-115 | 21 | 381 | 2 | 361 | Auxin response factor 1 |
| 4ldy_B | 1e-115 | 21 | 381 | 2 | 361 | Auxin response factor 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00021 | PBM | Transfer from AT2G33860 | Download |
| |||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna29771.1-v1.0-hybrid |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004293901.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
| Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
| TrEMBL | A0A2P6Q4C7 | 0.0 | A0A2P6Q4C7_ROSCH; Auxin response factor | ||||
| STRING | XP_004293901.1 | 0.0 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4576 | 33 | 55 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33860.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | mrna29771.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|