PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna28435.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 23208 Da PI: 8.0755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl mrna28435.1-v1.0-hybrid 17 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ mrna28435.1-v1.0-hybrid 70 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 113 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 10 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.917 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.34E-11 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.859 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.74E-13 | 74 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDKKPCNSSS QDAEVRKGPW TMEEDLILIN YIANHGEGVW NSLAKSAGLK RTGKSCRLRW 60 LNYLRPDVRR GNITPEEQLL IMELHAKWGN RWSKIAKHLP GRTDNEIKNY WRTRIQKHIK 120 QGDQSNSQGQ SSDGTADQAS TSKVGSSSTV GLDAMETTYP LCAPTASYPA TLVQPPAHPN 180 VLPPGDSNQD NYWSMEDLWS MQLLNGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 14 | 119 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna28435.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM099230 | 0.0 | KM099230.1 Fragaria x ananassa subsp. ananassa emission of benzenoids II protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468270.1 | 1e-154 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 1e-95 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A0K0MAN2 | 1e-147 | A0A0K0MAN2_FRAAN; Emission of benzenoids II protein | ||||
STRING | XP_004304632.1 | 1e-133 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-84 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | mrna28435.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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