PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28104.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 716aa    MW: 78620.3 Da    PI: 4.9158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28104.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-10537585247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              +rW+ +E++ l  +v+++G g+Wk+I        + Rt+ ++k++w++ 
  mrna28104.1-v1.0-hybrid 537 KRWSLQEEDTLRTGVQEYGIGHWKLILDAYRdafEERTEVDLKDKWRNM 585
                              59********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.832531590IPR017930Myb domain
SuperFamilySSF466891.09E-14533590IPR009057Homeodomain-like
SMARTSM007177.7E-8535588IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-12537588IPR009057Homeodomain-like
CDDcd116606.85E-19537587No hitNo description
PfamPF002492.3E-7538585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.110.105.0E-19625714No hitNo description
SuperFamilySSF476996.24E-19625714IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDDcd019601.08E-32625712No hitNo description
PRINTSPR003829.4E-13626642IPR000528Plant lipid transfer protein/Par allergen
SMARTSM004992.9E-4627711IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003829.4E-13646660IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003829.4E-13667682IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003829.4E-13702713IPR000528Plant lipid transfer protein/Par allergen
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006869Biological Processlipid transport
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDLDVDVSRW VLELLLRDRD KESVAKRVLA VAPLSDHDWR LKKTLLLRSI ESQIFDEASV  60
SESILESLES IEVLDRGQGI PVTDAMRAAY CAVATELTVR FLVCFRGKPG GKYMEAVDRI  120
WRGRVRVLEE TEGCELVSAE LKERRDEVEA GIWDMKVSKK LASLNSRNDA LRLVAAYVKE  180
AMAMLGPPFI AWAVRFNTEK GSISSEGEQV AVENDGNVGD GRVRVANGVD LEVQTMNGAD  240
LDAQMANGDN VPYGSELKAQ RGDNVNSVSE QEAQKANVAN DVSNASEREA HDTTVSDESE  300
SQVVTLACVN STSEMDHHTT NGVQLQVAGA GRLPSNGNRH VLSFEPETKE KETPRTMAPR  360
RRHGPAKIRD DEDVDKEAPA GIYNSVSSAE VKKVQEELKS SVLALQAAVT DPLPYALHIS  420
EMLRSELGMR PVDHVSKENG CATNPSVEKN AEPDQSNNDN HGNQTSHNND VPQPTPNLSV  480
DMGKGTENAG TGDVNPENPS CSHQNNVSRA SLMERNSTAR TYEKYDDKKI SKRRKVKRWS  540
LQEEDTLRTG VQEYGIGHWK LILDAYRDAF EERTEVDLKD KWRNMTRRLL TTEVAGMARF  600
QVGVAFMVLL ISMAMTTPYV TKATITCGEV TTLLTPCIPF GVLGGIVLPD CCAGIKGLNA  660
AQNTTEDRRT ACTCIQEGAA RIPGIDYDRI NMLGDLCGSP CPYKVYPSTD CSQVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2alg_A5e-20625714291non-specific lipid transfer protein
2alg_B5e-20625714291non-specific lipid transfer protein
2b5s_A5e-20625714291Non-specific lipid transfer protein
2b5s_B5e-20625714291Non-specific lipid transfer protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28104.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294731.10.0PREDICTED: uncharacterized protein LOC101296074
TrEMBLA0A2P6Q2380.0A0A2P6Q238_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004294731.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-11MYB_related family protein