PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27092.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 16877.7 Da PI: 7.9458 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.7e-16 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr + g+W +eIr+p +r++lg+f +aeeAa+a+++a+ + g mrna27092.1-v1.0-hybrid 5 KKFRGVRE-RHPGSWISEIRHP-----LlkRRVWLGTFESAEEAARAYDEAAILMSG 55 59****95.559*********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.20E-29 | 5 | 65 | No hit | No description |
Pfam | PF00847 | 3.8E-9 | 6 | 53 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-34 | 6 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.534 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-18 | 6 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-30 | 6 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MVGSKKFRGV RERHPGSWIS EIRHPLLKRR VWLGTFESAE EAARAYDEAA ILMSGRNAKT 60 NFPVTTTETE AANNSNINSN SSSSTSTSSL SAILSAKLRN CCKSLTSGSF TCLRLDTENS 120 QIGVWQKRPG PRSESIELAD DSGAGTEEWF TCGEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-14 | 5 | 70 | 4 | 70 | ATERF1 |
3gcc_A | 6e-14 | 5 | 70 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27092.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870387.1 | 3e-63 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 6e-52 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A3Q8TD67 | 1e-61 | A0A3Q8TD67_FRAAN; Transcription factor ERF35 | ||||
STRING | XP_009365414.1 | 9e-62 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 5e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna27092.1-v1.0-hybrid |