PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27062.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 166aa    MW: 17698.4 Da    PI: 5.2299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27062.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36e-161867255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             + kGVr++k +g+Wv+eIr+p   g +  r +lg+f tae Aa a++ a  +l++
  mrna27062.1-v1.0-hybrid 18 KLKGVRQRK-WGKWVSEIRVP---G-TqDRLWLGSFSTAEAAAVARDVAYYCLRK 67
                             679*****9.**********8...3.35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-211877No hitNo description
PROSITE profilePS5103219.9941877IPR001471AP2/ERF domain
SMARTSM003803.4E-231883IPR001471AP2/ERF domain
PfamPF008472.0E-71865IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-161877IPR016177DNA-binding domain
PRINTSPR003674.3E-81930IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-231977IPR001471AP2/ERF domain
PRINTSPR003674.3E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSYSSEDSSS PTAGNGRKLK GVRQRKWGKW VSEIRVPGTQ DRLWLGSFST AEAAAVARDV  60
AYYCLRKPST LEGLNFPTIL PCSVNQAADM SPRSIQKAAS DAGMAVDAQL INANSNSNSS  120
SQQNWRQANG SEPRVMQTGG SWEDGGESST TNSGEALSIS IEDYL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27062.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299862.11e-118PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I82e-43ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A3S8T9782e-95A0A3S8T978_FRAAN; Transcription factor ERF11
STRINGXP_004299862.11e-117(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-37ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]