PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26967.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 430aa    MW: 47554.5 Da    PI: 8.2415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26967.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12362407655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L++l P+     +k  + ae+Le+AveYIk+Lq
  mrna26967.1-v1.0-hybrid 362 SIAERMRRTRISERMRKLQDLFPNM----DKQTNTAEMLELAVEYIKDLQ 407
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15359421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-12360411No hitNo description
Gene3DG3DSA:4.10.280.102.4E-14361419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSSLLYSPQF KSSEAELRKS HTEFLDSSNG FQQQQSQQQQ SSGLMRYRSA PSSVLLDLVD  60
NNGGAGCEDF RDFRYPRPSS PEVETVLARF ISSCNAPDGD NGSNHSAHNL FQERPVKQEA  120
GDSVSKQNGY SNSPQMMYQT QQVHPLDNAS SFGAFKSTGL ENSMQSKMGA ANRSNLVRQS  180
SSPAGFFPNL NVDNGFNLMK DASSFGVSNG TNGEASPSTS RLSTQFSFSS ASPPYSTESR  240
RLPRIAEIGN GNIGEGSEPD QSLGNAANGG SSHYIPDYID NTWDNVAFHD LKRGRDNDGN  300
KFSTTAMDTQ IVDFGHRSHG LTHHLSLPKH FEMPGMEKLL HFQDSVPCKI RAKRGFATHP  360
RSIAERMRRT RISERMRKLQ DLFPNMDKQT NTAEMLELAV EYIKDLQKEV KTLKDTKAKC  420
SCSSKHKHN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26967.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308213.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_011468810.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_011468811.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A2P6S7D00.0A0A2P6S7D0_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308213.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-47bHLH family protein