PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26542.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 366aa    MW: 41887.7 Da    PI: 4.2833
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26542.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.2e-1711375128
                      NAM   5 frFhPtdeelvveyLkkk.vegkkleleevikev.diy.kvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                              +rFhPtd+elv +yL ++ v g+++++ ++++ + + y + ePw +  +   + + + + +yf+++r+k ++t k    ++ sg+W
  mrna26542.1-v1.0-hybrid   1 MRFHPTDKELVGHYLLNRaVMGDQFQT-KFVSGCpGFYgQNEPWVIWdQyggNKSDDVEALYFYTHRKKFNPTAKCFDLKVGSGTW 85 
                              69************9776367777887.88999977772569****633332222233466**************9999******* PP

                      NAM  84 katgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +++ ++ +v ++        +g+++g+++   + +g +p+ ++  W+m ey++
  mrna26542.1-v1.0-hybrid  86 REQRSEDDVDEEgsedvvdkDGSVIGIRRDYQYEDGCDPH-QNGAWLMREYQM 137
                              *****9999998666666556666************9999.89********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023651.0E-131136IPR003441NAC domain
SuperFamilySSF1019411.31E-171158IPR003441NAC domain
PROSITE profilePS5100522.7291159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRFHPTDKEL VGHYLLNRAV MGDQFQTKFV SGCPGFYGQN EPWVIWDQYG GNKSDDVEAL  60
YFYTHRKKFN PTAKCFDLKV GSGTWREQRS EDDVDEEGSE DVVDKDGSVI GIRRDYQYED  120
GCDPHQNGAW LMREYQMKTN THNNDATDQE LVLCVLRKNP EKVQPTTTTA TAIAKKNGND  180
AEDWCSVEVE ACRMLGQAWL QRKWKEREET REEGREEKEE EGSHGSSLRV VGGVVVVVVV  240
SVGLHGMRLV RKSKTAVKKP RELKKMKKKM AREFFSLEEL LPDYLAADDL DIMLSVDDLI  300
DDPNLMFLED ELLGDALVAE EEEEEEEETP ILIAFGDELQ EEEQESIDIS MSCFQEWVVS  360
NLFDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257268KKPRELKKMKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26542.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288862.11e-140PREDICTED: protein BEARSKIN1-like
STRINGXP_004288862.11e-139(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-09NAC-domain protein 101