PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26530.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 183aa    MW: 20055.9 Da    PI: 7.8826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26530.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-161970156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             + ykG+r +  +g+Wv+eIr+p+++    r++lg+++ +e+Aa+a++aa  +++ge
  mrna26530.1-v1.0-hybrid 19 CLYKGIRMRV-WGKWVSEIRVPKSG---GRIWLGSYDAPEKAARAYDAALYCIYGE 70
                             56*****999.**********9543...8***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-91970IPR001471AP2/ERF domain
CDDcd000187.57E-271977No hitNo description
PROSITE profilePS5103219.9152077IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-182077IPR016177DNA-binding domain
SMARTSM003806.5E-292083IPR001471AP2/ERF domain
PRINTSPR003674.6E-82132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-252177IPR001471AP2/ERF domain
PRINTSPR003674.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDLPTTSKSK KVRREKTPCL YKGIRMRVWG KWVSEIRVPK SGGRIWLGSY DAPEKAARAY  60
DAALYCIYGE CGRFNFPGDR RPVLPAGSAV SLSKFDIQQI AMNFASSYVP VSLPVSATIK  120
AEAQADTPTS PLVSKDMASK YEVKVDPLAP TCATGVGSSD PPEDFQLDDF LVLDTDWISD  180
FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1321771572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26530.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458844.11e-131PREDICTED: ethylene-responsive transcription factor ERF015
SwissprotQ6NLD51e-50ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A3Q8TB931e-129A0A3Q8TB93_FRAAN; Transcription factor ERF8
STRINGXP_004288858.11e-131(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154791011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.15e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]