PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26119.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 285aa    MW: 32242.2 Da    PI: 9.8222
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26119.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.2e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  mrna26119.1-v1.0-hybrid  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                             79***********************************************96 PP
2K-box1011.6e-33861806100
                    K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                               ++ +++ + +++ e+akLk+++e Lq++q h++GedL+sLs+k+Lq+LeqqL+++lk++Rs+Kn+l++e+i++lqkk k+lqe+n
  mrna26119.1-v1.0-hybrid  86 EQQDQDQSNGNWTLEHAKLKARVEVLQKNQSHFMGEDLQSLSMKQLQNLEQQLDSALKHVRSRKNQLMYESISTLQKKDKALQEQN 171
                              3345778899**************************************************************************** PP

                    K-box  92 kaLrkklee 100
                              + L+kk++e
  mrna26119.1-v1.0-hybrid 172 NLLTKKVKE 180
                              ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.52161IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-34288IPR002100Transcription factor, MADS-box
CDDcd002656.24E-43279No hitNo description
PRINTSPR004042.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2789178IPR002487Transcription factor, K-box
PROSITE profilePS5129716.53294184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SSMERILERY ERYSYAERQL LGNNHEQQDQ DQSNGNWTLE HAKLKARVEV LQKNQSHFMG  120
EDLQSLSMKQ LQNLEQQLDS ALKHVRSRKN QLMYESISTL QKKDKALQEQ NNLLTKKVKE  180
KEKAVAGSAP QSQAQAQVRG QAQAQVQAQA QAQAQAQSQW EQMQRQSFDS STSALLPQAL  240
PSMNFGGSSG GYDQDEEIPP PPQHQAAANS NTLLPPWMLR HLNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22174173MEF2C
5f28_B2e-22174173MEF2C
5f28_C2e-22174173MEF2C
5f28_D2e-22174173MEF2C
6byy_A2e-22174173MEF2 CHIMERA
6byy_B2e-22174173MEF2 CHIMERA
6byy_C2e-22174173MEF2 CHIMERA
6byy_D2e-22174173MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26119.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9998022e-68FM999802.1 Rosa wichurana partial mRNA for putative APETALA1 protein (ap1a gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464284.10.0PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ424291e-112AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2P6P3721e-132A0A2P6P372_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004299280.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-93AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]