PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26103.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 2539aa    MW: 279981 Da    PI: 8.1506
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26103.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.2e-06663684527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              +C +f+r G C++G++C+++H++
  mrna26103.1-v1.0-hybrid 663 ECFDFLR-GKCSRGGSCRYMHSE 684
                              788999*.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.23658685IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5658684IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.10001.1E-1123122507IPR023214HAD-like domain
PROSITE profilePS5096924.98523132497IPR004274FCP1 homology domain
SuperFamilySSF567847.83E-1823142506IPR023214HAD-like domain
SMARTSM005771.1E-723162481IPR004274FCP1 homology domain
PfamPF030311.8E-2023182504IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2539 aa     Download sequence    Send to blast
MYGQPNYGPP FAQGQTPMPP ANQQRPPPLP PPPPPFTAPH NVVTSAAPPQ PGPYLYQHGF  60
VPAAHQSPPV LFSGMMTTGP SYGGNTWHNA QRPPTTGNQN FQRTHPPALV TPHAAPYPNM  120
SQAAVPHGAL PPPPPQAASA QSPAPPLPTA PSPSTSLQNL DPDHGSNKLR LGEMRGMNNQ  180
VTASNNFEHF TSVHEHSQNV QGGSECEKAG SLARDGVSSN GSVMLNISSP PPKPSDDIVH  240
KIDSICQLSA MNEGKIESPS KSSQIDSSSQ PDQFMVSSGY SLPADSDMEM EDDITLSDGT  300
QEVHNSSDAL NRTSDINHGE LDVKKHLHGA QSSPEWTDPQ GVSFEKVPSS LSECQLIIQG  360
APSRVDICST GASESPLASQ QEKSSIPKAD DQNKLDASAA AEATTSDGFS NHITVNSPFR  420
LLQDYASENS SEDGDVGIPP SSVTTNVKSS AKDAGSQFEI GSKNPCMTDK MSGRQYESRR  480
SKFSLDTKKD VRSTDTTLII ESHEAFQGKD ALNGSPIDIA FKRDKSQEGK KTKSECLPKV  540
DEYGRLVREG SSDSNSDGSH YNKRRKRGRS RSRSRSRSRK RSRSRSRSPL DSRRRRSPPR  600
RREKRNRSPS DKGITVSHNI LLNYWCFSWS SRNQRGRSRS PTFRRAGEFR DENKRQDRRH  660
IPECFDFLRG KCSRGGSCRY MHSEHDRNDG SWRHRNQQKH LEVQSSVKKS RINEEIEDSS  720
DMRLHGEAKG QEMQIYPDMI TKDGQFNDTD KTDYKSSKMT AATVQVKQTL LGKSEEHSAH  780
NPESHHPSAE MLSSVDNMKS RRDTSQAIEQ SRSINFAGEV QKAYYPSQQM EASLVSDSPP  840
DRPSKTSPYK VSSIEPAADA ILSIQSCPTE SSNAQPLSSG QFSSQFLAPK ESPLPGFSAA  900
NSPYPSKLPP PPPPSLSQGT SVAHVPQLHR DYSQRPPYPV QSIPTGTMHA HAYQGPLSNQ  960
PSQFPVSQES TWPSLPPPPP RPPYDSSLNP GTAAQDASSH FQQNHLAPRS DFGSQSSMRP  1020
YGSYPTESPH SKGEFLHQMY PTLSELPHPP PNREDFGSGN PSNQHFGGPD HMREDRFTHA  1080
PVQNVNPSHS FAQGHTHPQP PPPSQELTRI KMKNFSGDNF PVGELFNSSS QIHPHSHNQQ  1140
PSYGVGDSIL GVPGKTGAQY PVGGSILGFP GKDGPMSRYP PDMPDRSQFS QVPDFGESRI  1200
QTHHNPYAAT FEQPLSFKFS SNTLIQGKNA PAANMFDTPV QVPVDGQGVG SAGSRQTTSS  1260
PSSAGAVSQL LRKSVSEQYD PLLDSIEPSG NPLNKHDQSQ KHTATNDSNM MVRFSGSCEP  1320
LDVEENKKHT EVGPVASATS LDNDGYGETA DAEVGVVEDE SLSNDDGGAN MAVGEMEIDQ  1380
VKSGGKSRKK KDSRSTRLFK SAVADFVKDL LKPSWRQGNM SKEAFKTIVK KTVDKVSGAM  1440
KSHQIPKSEA KINHYIDSSQ RKLTKLVMHA MAEILTRRYT VFSSWNSSVG IESSQINREY  1500
ERTLACHRSR AYSSSYCLCH STPGKGRDKM AVEDLCLLTS ETCTVPNSES PEPDVELGSL  1560
LKKKRKKKKR CKLESSDKSC EIKFGAESFH KKKKKKKKGY ETSEANDTSC ESPSLQPQLV  1620
QLSDQQAPQP LTEKVATITD SEIPQSNVEP GLPSKKKKKK KKKNGCETSK TNDTSCESPF  1680
LQPPLVQLSD QQAPQPLTEK ITTITDSESP QSNVELSFPQ NKNKKRKKKK GCKTTETNNQ  1740
EVEMSQPIEA VQPQLVHVID EKLEVPQPIE DLSFSVKSKK RSGKKSHKLH DCKNEVCGVP  1800
VMESKMPAVD PCIQPCVEIS LKQLVAEPLV EGISTATNSK SPNPNADFGC SQETKKKKQK  1860
RSHKTNVDKE LLVETMMAEA DPSFKPSLAM VSEQEAQISQ PLVEGMSRTV NSENLRPNAE  1920
ETKKKKRKRG HKTSDSLEVP PPLNTDAEPH VEGVSVTMNS ESHEPNADIS CSQETKKKKR  1980
KRGHKTNDSL EVPPPLNTDA EPHVEGVSMT MNLESLKPNA DPLLAIFSEH ELEVPPPLDT  2040
DAEPMSVIVN SESPKPNADI SCSQETKKKN RKRKHKTKLL EEVMTPDADP SLQPILSEKE  2100
LEVPLPLNTD AEPLLEGMST TMKSGSPKPN ADISCSQETK KKDRKRKRKT SESKEISVEI  2160
LTPEADPSLQ PSPAIQEVEV SPLHTDAQSL VEGVSTKTSE TPKPSAAFGC SQEKKKKNSK  2220
RKHRTNENKE LLVEVTMPDT YPSLQSPVSV FSEQKAEVAL PLNNGTELKE TKIDEVPSLS  2280
HLSPIADSEV VAIGREGNLL QMSNSSPERS LLNCSQKKLL ILDINGLLAD IVQMEVSIPS  2340
SFKPDKIISR KAVFKRPFCD DFLQFCFDRF NVGVWSSRTK RNVDIFIDFL LGDSKHKLLF  2400
CWNQWHCTST RFKTEENKNK PLVLKELRKL WEKLVPGLPW AKGEYNESNT LLLDDSPYKA  2460
LRNPVNTAIF PTSYQFRNRQ DSSLGPGGDI RSYLEGLAMA ENVQKYVEQN PYGQQPITES  2520
NPSWNFYRRV IEDVKPLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1576586RSRKRSRSRSR
2578586RKRSRSRSR
3578595RKRSRSRSRSPLDSRRRR
4579584KRSRSR
515641569RKKKKR
615651572KKKKRCKL
717231727KKRKK
819751980KKKKRK
919751981KKKKRKR
1021402148KKDRKRKRK
1121432148RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26103.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301108.10.0PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1
RefseqXP_011464298.10.0PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1
RefseqXP_011464299.10.0PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1
STRINGXP_004301108.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF785533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-12C3H family protein