PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna26081.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 481aa MW: 53835.6 Da PI: 6.6249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna26081.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	389	411	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H mrna26081.1-v1.0-hybrid 389 HSCPICLKVFPTGQALGGHKRSH 411 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52047	8.11E-14	3	182	No hit	No description
Gene3D	G3DSA:3.80.10.10	3.5E-12	3	138	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF08387	9.6E-6	185	224	IPR006566	FBD domain
PROSITE profile	PS50157	9.141	389	416	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.3E-11	389	412	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	391	411	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MYNLIHLQLH HCLLKPPSTF GGFKSLEHLE IQHVTFAQHV FDGFIVGCPK LKTLILKECD 60 GFKNICIDAP NLKSLVIDGC FEDVSLQNTL NLASVHITLD FNVRWAGGSS ANLLQFFVHL 120 PNIRDLHLLY YSLKYLDVGP LLGKLPQPIR SLNDLHMAVD YDYTFDDDYV EEANSWLENL 180 GDSLDCQLNE LRRIEIDSIS GAKAELDFIK FLLLSSPVLE CMTLKWSTVK PHLPLEQLKE 240 VVVQFTPASL QAELIFLDPT SENNSRFSDA PSSLKMNRVS KIKGATLETF EMKILRKKMS 300 QEEVYVGVFS KSDKTKKNLI LEKTEASHKK IKRCFASKIE SSENTTEFDT DLSTDHHPVA 360 SDHSKLSNLI HQQDVVIKAE RNSTKSKGHS CPICLKVFPT GQALGGHKRS HLIVGPTESK 420 NNQSTIDIPK PATPEVRDFL DLNLPAPVEE ESSTNHAAAA QALKPWWAGS NHKPYEALVS 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MYNLIHLQLH HCLLKPPSTF GGFKSLEHLE IQHVTFAQHV FDGFIVGCPK LKTLILKECD  60
GFKNICIDAP NLKSLVIDGC FEDVSLQNTL NLASVHITLD FNVRWAGGSS ANLLQFFVHL  120
PNIRDLHLLY YSLKYLDVGP LLGKLPQPIR SLNDLHMAVD YDYTFDDDYV EEANSWLENL  180
GDSLDCQLNE LRRIEIDSIS GAKAELDFIK FLLLSSPVLE CMTLKWSTVK PHLPLEQLKE  240
VVVQFTPASL QAELIFLDPT SENNSRFSDA PSSLKMNRVS KIKGATLETF EMKILRKKMS  300
QEEVYVGVFS KSDKTKKNLI LEKTEASHKK IKRCFASKIE SSENTTEFDT DLSTDHHPVA  360
SDHSKLSNLI HQQDVVIKAE RNSTKSKGHS CPICLKVFPT GQALGGHKRS HLIVGPTESK  420
NNQSTIDIPK PATPEVRDFL DLNLPAPVEE ESSTNHAAAA QALKPWWAGS NHKPYEALVS  480
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna26081.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1101	30	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-16	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	mrna26081.1-v1.0-hybrid