PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25871.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 432aa    MW: 49843.8 Da    PI: 8.689
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25871.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.72e-15140180242
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                               i+n+  r+vtf kR++g++KK +EL  LCd++ +vii+ +
  mrna25871.1-v1.0-hybrid 140 LIKNEKSRNVTFRKRKKGLMKKTFELNKLCDVQCSVIIYEK 180
                              59************************************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0304614.84545114IPR018783Transcription factor, enhancer of yellow 2
PfamPF101632.2E-2150111No hitNo description
SMARTSM004326.6E-9129192IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.231131178IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-9133153IPR002100Transcription factor, MADS-box
CDDcd002662.42E-16134220No hitNo description
SuperFamilySSF554554.45E-17134211IPR002100Transcription factor, MADS-box
PfamPF003196.0E-16141186IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-9153168IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-9168189IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.30.1440.101.1E-5194287IPR022803Ribosomal protein L5 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006406Biological ProcessmRNA export from nucleus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000124Cellular ComponentSAGA complex
GO:0005643Cellular Componentnuclear pore
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MMPNQNENQP NPRFKAQTQP TPFLRKSVNR QPAPEVEENQ DKEPSFEELI NIELIESGEK  60
ERLMELLRER LIECGWKDEM KALCRSFIKK KGRNNVTVDD LVHVITPKGR GNSGGVYVGF  120
VMMLNGWIMG RSNTKLPLEL IKNEKSRNVT FRKRKKGLMK KTFELNKLCD VQCSVIIYEK  180
KPNGQLVRPE TYPENPEEVK QIIDRFVSKS AKVRKVENLA DYFGKQIMQV KKETAKLRQK  240
NNETRFPSWD DRLNDLSLDQ LLDLLKKLDH KIEDVHQRFD KQYAIDVGIL SQTALFSNNN  300
LEYSQMVALN EYPNSGSMMY ISDRALPEEQ SNLQVFQNNL INYPQSYNSG SIVMNRNGMP  360
WQNYNIQSAP SASNGSNYDE SITSLRFENR LQYGSMDDNL TLCNQVPLQT VYPMSASYLC  420
DNANQFLHLK G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dhx_B6e-2136111277Enhancer of yellow 2 transcription factor homolog
4dhx_C6e-2136111277Enhancer of yellow 2 transcription factor homolog
4dhx_E6e-2136111277Enhancer of yellow 2 transcription factor homolog
4dhx_F6e-2136111277Enhancer of yellow 2 transcription factor homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25871.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467688.10.0PREDICTED: agamous-like MADS-box protein AGL21
TrEMBLA0A2P6S6E50.0A0A2P6S6E5_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305907.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.15e-12AGAMOUS-like 36