PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25809.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 628aa    MW: 71542.8 Da    PI: 4.862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25809.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011295315222
                              EETTTTEEESSHHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                               C  Cgk F++  + k+H ++
  mrna25809.1-v1.0-hybrid 295 YCVVCGKKFKSEKQWKNHEQS 315
                              5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.57E-23184IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.8E-23273IPR001623DnaJ domain
SMARTSM002711.4E-21466IPR001623DnaJ domain
PROSITE profilePS5007618.927574IPR001623DnaJ domain
CDDcd062571.45E-16563IPR001623DnaJ domain
PfamPF002261.5E-20671IPR001623DnaJ domain
PRINTSPR006256.8E-15725IPR001623DnaJ domain
PRINTSPR006256.8E-152540IPR001623DnaJ domain
PRINTSPR006256.8E-154666IPR001623DnaJ domain
PROSITE patternPS0063605170IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.93E-13285336No hitNo description
SMARTSM004512.5E-4291325IPR003604Zinc finger, U1-type
PfamPF121713.3E-10294319IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.43294318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296318IPR007087Zinc finger, C2H2
SMARTSM003556.1598622IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619598627IPR007087Zinc finger, C2H2
PROSITE patternPS000280600622IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MERRCHYEVL GLDRGCAADE IKSAYRKLAL QRHPDKLVPT GVSQADANAQ FQELGHAYEV  60
LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYS  120
DVFTKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYSQV TAFYNYWLGF CTVMDFCWVD  180
QYDVMAGQNR KLRRLMEEDN KKQRKKAKRE YNDTVRGLAE FAKKRDKRVM DMMVKREEER  240
KRKKKEEVEK KKRMEREKLE RAMAFEEPEW AKAEEDDEEE VDEEEEEERK RNELYCVVCG  300
KKFKSEKQWK NHEQSKKHKD KVAEFRESIG DEEEVEDLGE RMREGLEIGE EGESGGEDEF  360
HDFSDEKLDK DDDDDGDDDE MELLQAMAAR HKSREELDDD DDDEDDDEME LLKAMAARHK  420
SRENVGEAVG VDDGGSESDD EMDVLEAMVA GRKSRKNAAS KVEVEDPLVT RVHGDNDING  480
VESVPMEYEN RKPPRRKAKS KKSGGETKRV DMNDISNDQS EAGENDNSDI KESTSDSMAE  540
KENASSNDKQ DNQIARKKKS SKQTVEKKKE NVKNEANGKS KSSSKGKKAK ATSKNSSNAC  600
DTCGEEFGSR NQLHKHLGDT GHASLKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208KKQRKKAKR
2222244KKRDKRVMDMMVKREEERKRKKK
3239243RKRKK
4239245RKRKKKE
5493499PRRKAKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25809.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464316.10.0PREDICTED: dnaJ homolog subfamily C member 21-like
SwissprotQ9C9111e-178JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2P6P3070.0A0A2P6P307_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004301120.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-119DNAJ heat shock N-terminal domain-containing protein