PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25758.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 259aa    MW: 27960.8 Da    PI: 4.789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25758.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1883133155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  mrna25758.1-v1.0-hybrid  83 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 133
                              68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1283133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3284142IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2184142IPR016177DNA-binding domain
SMARTSM003805.1E-3684147IPR001471AP2/ERF domain
PROSITE profilePS5103223.1384141IPR001471AP2/ERF domain
PRINTSPR003672.3E-108596IPR001471AP2/ERF domain
CDDcd000182.41E-3285143No hitNo description
PRINTSPR003672.3E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAEPNNSEA ESTTTSNSSS LCSVASSPCL SGLLQTATHP KSPSNTTKNP KTSQKGDSSS  60
LQQKTSLKRA REPTDNNNNS KHPVYRGVRM RNWGKWVSEI REPRKKSRIW LGTFSTPEMA  120
ARAHDVAALS IKGNSAILNF PELAELLPRP ESLQPPDIQA AAAKAAAMVH LDSTTTTSSS  180
STSSSSSSSE GLESGEDELG EIVELPNIED SFNSGESRSE FILVNDTVDI GWLYDHPPLM  240
GLDHFEEDLV SWDIQMIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1979141972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25758.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466674.10.0PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q8TD750.0A0A3Q8TD75_FRAAN; Transcription factor ERF24
STRINGXP_004302874.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]