PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24434.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 713aa    MW: 78628.8 Da    PI: 10.2256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24434.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.1e-101162244
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrw 44
                             ++W t E++llv+av+++G+++W+++a+++            +t+ +c++++
  mrna24434.1-v1.0-hybrid 11 QPWGTLEELLLVCAVNRHGPNSWDSVASELHsrsssssaaPALTPHSCRDKF 62
                             79*****************************888888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.818566IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-6746IPR009057Homeodomain-like
SuperFamilySSF466891.17E-5963IPR009057Homeodomain-like
SMARTSM007172.2E-4968IPR001005SANT/Myb domain
PfamPF002498.3E-91164IPR001005SANT/Myb domain
CDDcd001675.99E-51262No hitNo description
Gene3DG3DSA:1.20.920.101.7E-11282445IPR001487Bromodomain
SMARTSM002975.6E-4294433IPR001487Bromodomain
PfamPF004396.1E-7361417IPR001487Bromodomain
SuperFamilySSF473701.44E-12362437IPR001487Bromodomain
CDDcd043691.94E-10363428No hitNo description
PROSITE profilePS500149.628363414IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MASREHETSA QPWGTLEELL LVCAVNRHGP NSWDSVASEL HSRSSSSSAA PALTPHSCRD  60
KFDDLRRRYD AAADADGGVD VMVDELRRLR VEELRREVRR RDVSIVSLES KVKKMEEDRD  120
RSLNPPPPPP AEDLHRGGGG EETAPSEKLA GKSNSGEDFV SDSSERENRS FNESNSTSQR  180
SDAKPNGVVE KKAEADVAPG PGSDPAQPQT RSEPASANGK VIDDDDVDGG EPSGRPDEVV  240
GAKRAVEKEV RKQNNSDVQS SASLSRKRKR RRKGGESSSG EEPEGGEEVS PATTKRVKLV  300
KLEPLVKVLR LVRSHRLGSV FQRRLRSQAF FECEPITVWH FPVMMVKLSL WICDGGVLES  360
QRYKNLIREH VDLHVVQSRL DKGVYKDCSH KFFRDLLLVF SNAVVFYRKA APEHVAALEL  420
RSLVLKEMND QLPKPQPAVS TVKPKPNIES DITTTTTTTS MRPSKSSSIV VCGKRGSINA  480
LSENKKGTVR KVEVEEKEAK VKVEDIDATV KVEEKGVRKR RSTQERRGGG RLRTTTTNRK  540
NVDAKTNVNE SGGNGVSLHE GLEVVKTEKK EDLKKKQGAA SFLKRMKQNS GRGVGRGSNG  600
SDVSEDESKD CMVDEEEEDE VEVEQEEKKK KRTGRKKTDQ VEKKERVTRS ASGNRGRRGG  660
RGQESGGRGR RGVGRPPKKP ETAVAGSGKR GRDNGEADQV GSAGRPRKRT RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270RKRKRR
2266271KRKRRR
3266272KRKRRRK
4267271RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24434.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462241.10.0PREDICTED: uncharacterized protein LOC101311266
TrEMBLA0A2P6QMS70.0A0A2P6QMS7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004296306.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-19DNA-binding bromodomain-containing protein