PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23816.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 201aa MW: 23134.7 Da PI: 9.0857 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 5.9e-12 | 84 | 174 | 2 | 80 |
EEE-..-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 +k+lt+sdv +rl ++k+++++h +g++ + ++++ +d+ g+++ + ++++ ++ +vlt+GWk F+++++L mrna23816.1-v1.0-hybrid 84 EKQLTRSDVKDDqARLAMSKEHVTNHlipllnenedlyQGIH-NAMKVITYDLAGKEYPMAFKIWASK-IHVLTGGWKTFCHEHDL 167 79*******98879***************9998888885553.7799***************999987.789*************9 PP -.TT-EE CS B3 75 k.egDfv 80 Dfv mrna23816.1-v1.0-hybrid 168 VeIQDFV 174 8577877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 3.81E-14 | 83 | 193 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-15 | 83 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0047 | 83 | 195 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-15 | 83 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.8E-9 | 84 | 177 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MKHAVDHKKD TKILEDHNLK SDFQIGLSPD AKIKRQKALK IEEHKEATIG VQQRGLYRQN 60 YAPSNLPPIP RLHSLIQICS KPYEKQLTRS DVKDDQARLA MSKEHVTNHL IPLLNENEDL 120 YQGIHNAMKV ITYDLAGKEY PMAFKIWASK IHVLTGGWKT FCHEHDLVEI QDFVRVWMFR 180 NVATGNLCFV IDRVERNAGL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23816.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463999.1 | 1e-150 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A2P6RSD2 | 5e-71 | A0A2P6RSD2_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | EMJ05979 | 1e-60 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 3e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna23816.1-v1.0-hybrid |