PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23565.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 442aa    MW: 49665.1 Da    PI: 6.5863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23565.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.93e-78554281374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfs 85 
                              l +lLl++A+ v +++  +a++l +  + l+s++g+++q+++ yf +AL++r  r ++  +yk+ ++++   ++ ++++a   +f+
  mrna23565.1-v1.0-hybrid  55 LAHLLLAFADKVGKQQYDQARKLQNLCHFLSSNTGNTVQKVVYYFSKALQERTDReTGRITYKSSESKDLLAMHLEKTMACCPAFF 140
                              579******************988888888*************************6666677777777777777777777777777 PP

                     GRAS  86 evs...PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLak 167
                               ++   P++++++++  qaI+e+v++++rvH iD++i  G++   L+qaLasR e+p  +l++T+vg+  ++s+++le tg+rLa+
  mrna23565.1-v1.0-hybrid 141 ACFlelPFYQVTQFAGIQAIVESVASAKRVHFIDLEIRSGGHCTVLMQALASRYEQPIeMLKVTAVGN-GTSSRQKLEDTGKRLAQ 225
                              775555***********************************************9666559********.5579************* PP

                     GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                              fAe+l++pf f++ ++++++d++ ++++ + gEa+aV ++l+  ++     sl+++ ++ + ++++l+P ++v++e ea++ s+ F
  mrna23565.1-v1.0-hybrid 226 FAEALHLPFTFKIAMVTNINDINEDAFESEDGEATAVYCSLMRSSMI----SLPDCLETAITALRKLNPCLMVITETEANLYSPVF 307
                              *************9999************************888887....77777778*************************** PP

                     GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +rf eal yy a +d+l++ + + s  r+ +E+ +l+++i+n++a e++ r+ rh +   Wr+ + ++G+ +v+ls +   qa+l
  mrna23565.1-v1.0-hybrid 308 EDRFNEALFYYGAYYDCLDVCMDSCSPYRRELEETFLAQQIKNIIASEEE-RIFRHMRIDVWRSLFAKFGMVEVELSLSSLYQADL 392
                              **********************************************9987.7********************************** PP

                     GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++++ ++  +++ + ++l+ gWk+ p++s+SaW+
  mrna23565.1-v1.0-hybrid 393 TAKQFAcGKSCTLNMNGKCLTVGWKGTPILSLSAWK 428
                              ******9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.71829407IPR005202Transcription factor GRAS
PfamPF035141.0E-7555428IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSSVSRLSTV EVMKVARARF IQFSSQKYAD DSIPNHVLGC APLGLSDQDA KEVELAHLLL  60
AFADKVGKQQ YDQARKLQNL CHFLSSNTGN TVQKVVYYFS KALQERTDRE TGRITYKSSE  120
SKDLLAMHLE KTMACCPAFF ACFLELPFYQ VTQFAGIQAI VESVASAKRV HFIDLEIRSG  180
GHCTVLMQAL ASRYEQPIEM LKVTAVGNGT SSRQKLEDTG KRLAQFAEAL HLPFTFKIAM  240
VTNINDINED AFESEDGEAT AVYCSLMRSS MISLPDCLET AITALRKLNP CLMVITETEA  300
NLYSPVFEDR FNEALFYYGA YYDCLDVCMD SCSPYRRELE ETFLAQQIKN IIASEEERIF  360
RHMRIDVWRS LFAKFGMVEV ELSLSSLYQA DLTAKQFACG KSCTLNMNGK CLTVGWKGTP  420
ILSLSAWKFH AVNTKTSKYL M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-328542833375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23565.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308535.10.0PREDICTED: DELLA protein GAI1-like
TrEMBLA0A2P6SCD50.0A0A2P6SCD5_ROSCH; Putative transcription factor GRAS family
STRINGXP_004308535.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-50RGA-like 2