PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23564.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 590aa    MW: 66388.7 Da    PI: 4.7159
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23564.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.27.3e-872225871374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklf 84 
                              lve Ll+ Ae v  ++ e+a++lL+  ++l+s +g+p++R+++yf eAL+ ++ r   e+ +  + +++ +++  + +      + 
  mrna23564.1-v1.0-hybrid 222 LVEFLLASAEKVGYQQYERATKLLTLCEKLCSDRGNPVERVVFYFCEALRDKIDR---ETGRPAQNKQAFDMEkaMMSPSETSLAC 304
                              57889**************************************************...4444343333333331222222222337 PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                              ++  P+ ++++++  qaI+e v+++++vH+iD++i  G+QW  L+qaLasR+ +   l+i +vg     ske++++tg+ L++fA+
  mrna23564.1-v1.0-hybrid 305 HNKIPFGQVAQFAGIQAIVEKVAEAKKVHVIDLEIRSGVQWTVLMQALASRDFPLELLKISAVGT----SKEAIQNTGKWLESFAK 386
                              8889*************************************************************....***************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++++pf+f+++++ ++ dl+ ++++++++E++aV +++ l  ++ ++  les    v++++ks+ P v vv+e ea+hns+ F++r
  mrna23564.1-v1.0-hybrid 387 TMNLPFSFQMVMVPDMLDLKEDMFELDSEETVAVYSQFVLRCMVPQPDRLES----VMRVIKSIHPSVTVVTEVEANHNSPVFVTR 468
                              **********9999**************************999977777777....****************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+e+l ++sa+fd++e+ + +++  r ++E +++g+ i+n+va+eg+er+ rh +   Wr+ + + G+++++ls++   qa+l+ +
  mrna23564.1-v1.0-hybrid 469 FIETLFFFSAFFDCVETCIEKNDPIRESLESQYFGNGIKNIVATEGEERKIRHVKIDIWRAFFARYGMEELELSSSSLYQAELVSK 554
                              ************************************************************************************** PP

                     GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              k++ +   ++  + ++l+ gWk+ pL s+S W+
  mrna23564.1-v1.0-hybrid 555 KFPcGSSCTITMDGKTLLAGWKGTPLQSLSLWK 587
                              ***9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.811196566IPR005202Transcription factor GRAS
PfamPF035142.5E-84222587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MANTMFSFGE FNYGGVQDKL GSAVENMEVD NIGGKQVYEA ENWGSFGSLC SDYGIYGNSF  60
SDYRKYQQQD QQQQLQPQLI SDYGVFDDMQ FQYGALSPPL QACLEEIAKL ENIPTLVPHV  120
EPPKKELKRD IFPVAGLDLL NNYGSGFKRL NGERIIESNP YAAYTEVKSS KLSTEEIMRV  180
AGARFIRTAS QVSASDIPSM LSHPFELSFA GLSDEESRDV ELVEFLLASA EKVGYQQYER  240
ATKLLTLCEK LCSDRGNPVE RVVFYFCEAL RDKIDRETGR PAQNKQAFDM EKAMMSPSET  300
SLACHNKIPF GQVAQFAGIQ AIVEKVAEAK KVHVIDLEIR SGVQWTVLMQ ALASRDFPLE  360
LLKISAVGTS KEAIQNTGKW LESFAKTMNL PFSFQMVMVP DMLDLKEDMF ELDSEETVAV  420
YSQFVLRCMV PQPDRLESVM RVIKSIHPSV TVVTEVEANH NSPVFVTRFI ETLFFFSAFF  480
DCVETCIEKN DPIRESLESQ YFGNGIKNIV ATEGEERKIR HVKIDIWRAF FARYGMEELE  540
LSSSSLYQAE LVSKKFPCGS SCTITMDGKT LLAGWKGTPL QSLSLWKFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3523058627378Protein SCARECROW
5b3h_A3e-3523058626377Protein SCARECROW
5b3h_D3e-3523058626377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23564.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308534.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P6SCD00.0A0A2P6SCD0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004308534.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-48RGA-like 1