PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23113.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 27303.1 Da PI: 4.6761 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.4e-17 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++ mrna23113.1-v1.0-hybrid 57 RGNITEDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSF 101 7999******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.355 | 11 | 51 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.58E-21 | 13 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0015 | 15 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 18 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.634 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 57 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 59 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.31E-11 | 61 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRSSTYYDK HQGLKKGVWD PKEDQIVKDY VKKHGLKRCG KSVRLRWLNY LRPDIVRGNI 60 TEDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS FVKRKLQPEN PLEVPRNEKI 120 REDSPSSAAV AAAAEDSPHL TENNVNEEED DHNQYHDFDV GVGVAVESDA INDNGSGDDE 180 HLRDDLWWNN FMMDLNGTEC NVSEFQTDFT EIWESKENVI PVGDCSTDHH DIMPTNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 14 | 106 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23113.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298561.1 | 1e-167 | PREDICTED: transcription factor MYB82-like | ||||
TrEMBL | A0A2P6Q1H2 | 1e-104 | A0A2P6Q1H2_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004298561.1 | 1e-166 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34688 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 7e-46 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna23113.1-v1.0-hybrid |