PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23108.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 387aa    MW: 42280.2 Da    PI: 7.4983
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23108.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.1e-391676262
                   zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             ++++lkcprCds+ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+P+Ggg+rk+ k+s
  mrna23108.1-v1.0-hybrid 16 EQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPIGGGSRKSTKRS 76
                             57899***************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-251165IPR003851Zinc finger, Dof-type
PfamPF027016.3E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.052074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MQDPTTFQPI KPQFPEQEQL KCPRCDSSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGSL  60
RNIPIGGGSR KSTKRSSSGS KRSSSSATNS SSSTLSSSAA AAAAGAQNQM GQKIDQENPM  120
VGISGSFSSM LTSNDQFGSL MEGLNPNGPG LKLMQMGDFG ENVVDSSGHG LNLDPGLEVQ  180
SNGNPESYMS LQNGDWNGSS GWPDLAIYTP VLGVLDFEFG FYHHVKLPTK VEEKGDQHFS  240
SLAILSFNVF QYQLQGEHTH MVTRQDGALV VEILNLWRTA GVGGRVVDVM VGPGCGLSLS  300
DLGCFPSMWP LEDCTTDTKS HPVTKRLQPF DKARSSPPTY NRHGMQDMSN SFPSMLPLED  360
CTSDTKSYHA TRRLQPFDKV RNSPPT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23108.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297611.11e-151PREDICTED: dof zinc finger protein DOF1.7-like
TrEMBLA0A2P6RXV21e-100A0A2P6RXV2_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004297611.11e-151(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.17e-34DOF zinc finger protein 1