PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22621.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 699aa    MW: 77339.3 Da    PI: 9.9465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22621.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.2e-121263348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                              WTt+E++ll++av+++G+ +W+++a+ +       +++++  ck ++++++
  mrna22621.1-v1.0-hybrid 12 TWTTWEELLLACAVHRYGTQSWDSVAAQLRkrssnlLHLSPQTCKRKFHDLR 63
                             6*****************************9999999999999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-6662IPR009057Homeodomain-like
PROSITE profilePS500906.411963IPR017877Myb-like domain
SMARTSM007171.5E-5965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-6946IPR009057Homeodomain-like
PfamPF002494.0E-111262IPR001005SANT/Myb domain
CDDcd001675.19E-61262No hitNo description
SMARTSM002974.6E-11293398IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.5E-15297399IPR001487Bromodomain
SuperFamilySSF473701.96E-16297402IPR001487Bromodomain
CDDcd043693.80E-13300393No hitNo description
PfamPF004392.5E-8307383IPR001487Bromodomain
PROSITE profilePS5001412.168308379IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDKPSFPEKQ TTWTTWEELL LACAVHRYGT QSWDSVAAQL RKRSSNLLHL SPQTCKRKFH  60
DLRLRFSHHN DAARDGDDDE DAASPIPWLG QLRQLRLDEL RREVHRYDVS IVSLQLKVDR  120
LKEVREKSDL VRSGEDQQIR DQPVVPENIS PENVAGKKNS GEGRSFDESN TIDPEREIPG  180
TGVELAVKAA EPVEPAAGDV GAVEKSSNPV VVEDSCNGSS DSVVKEAPAA ESEKANSGEV  240
RDSVAESKET KECRSSSEVQ STASLSRKLG PEVKPSEPVE PDQEDQSPAM NQVLVESQPL  300
VEFLGMLRSQ KAASFFERRL QSQDTPIYTN MIRQHIDFES VQTRLNAGWY SSCKIKFFRD  360
VLLICKNAVV FFGKRTAEYK AACELQLLVL KEMAHKDPNQ DPSPKQETQT PSKDEILTPP  420
AIPLKPASES SESLLAKSKL SIPLTACRKR SSIKARASTS SLAPDIKKEQ MTTSLHDVKP  480
AISWKQKEES LDEVEEQLPV TKKRRKDRVG SNSRNNSNKN GKSRSDANKE KNLDANANAN  540
VGSSSRAMIS NENSESLAET EKKNNTAIGK RQSAEKFLSR MKRSSTSNNK SETLKILEND  600
SIGVAEQRKN GNSKGNVQKA AQQRKNGNSK GNARKEVVEQ KKSGNGKGSA EKQQASRRGS  660
GGRQAAKEQE SPSKRSVGRP SKRTAETTRA PPAKRRRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1501505KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22621.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304372.10.0PREDICTED: uncharacterized protein LOC101292525
TrEMBLA0A2P6RDJ20.0A0A2P6RDJ2_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304372.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.15e-78DNA-binding bromodomain-containing protein