PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22558.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 281aa    MW: 32459 Da    PI: 6.5293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22558.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.12.3e-2551332128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 
                              p+GfrFhPtd++lv++yL++k+   + ++    ++++ + y++ePw+  +    +  ++ + ++fF+kr+k +++g+r  r++ +g
  mrna22558.1-v1.0-hybrid   5 PVGFRFHPTDNDLVSHYLRNKAMLGDgFRS-PYVSDCpEFYSSEPWTVWEkyggNSVEDGEPLFFFIKRKKLNPKGSRFDRKVGTG 89 
                              89*******************877773555.6699998**********742343222345577*********************** PP

                      NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +W+ +    +v++ +g+++g+k+ + +  g +++ ++  W+m+ey+l
  mrna22558.1-v1.0-hybrid  90 TWSGQYF-AKVME-EGKVIGIKRNFRYE-GGSSSDQNNAWLMDEYEL 133
                              **98876.66777.899*********98.55555699********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-263146IPR003441NAC domain
PROSITE profilePS5100528.0414150IPR003441NAC domain
PfamPF023655.0E-185133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MERFPVGFRF HPTDNDLVSH YLRNKAMLGD GFRSPYVSDC PEFYSSEPWT VWEKYGGNSV  60
EDGEPLFFFI KRKKLNPKGS RFDRKVGTGT WSGQYFAKVM EEGKVIGIKR NFRYEGGSSS  120
DQNNAWLMDE YELNKNDVTV VCVLRKNPTK PPPKTNETKR KLKDGVDGIE QDLDQRRKLI  180
SNLDQRRKLR GNYMPEKEGT SYREEQGGSS SSIDHHQASS SWTPKQEDYR PELAPDLAAA  240
DDFVFYTHDE LLASTSKSND FLDRFYEDNN FDQLVHKQVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-15413315140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22558.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466308.10.0PREDICTED: protein NTM1-like 8
TrEMBLA0A2P6R6W01e-133A0A2P6R6W0_ROSCH; Putative transcription factor NAM family
STRINGXP_004304999.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-17NAC-domain protein 101