PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21456.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 612aa    MW: 70032.5 Da    PI: 9.6668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21456.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07453515147
                              TSSS-HHHHHHHHHHHHH.TTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkq.lGgg................tWktIartmgkgRtlkqcksrwqky 47 
                              +g W++eE e l d+v++ l ++                +W++I++t+g +Rt   c ++w++ 
  mrna21456.1-v1.0-hybrid 453 KGQWSQEEYENLFDLVNKdLRMKvfeekktkhgmlrdniCWEAISETLG-TRTNAVCSLKWYNQ 515
                              799*************8757777**************************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.7323400IPR001005SANT/Myb domain
PROSITE profilePS500906.237398447IPR017877Myb-like domain
SMARTSM007173402449IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-6403464IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-6405457IPR009057Homeodomain-like
PfamPF139212.1E-9406464No hitNo description
PROSITE profilePS500908.525448516IPR017877Myb-like domain
SMARTSM007170.012452518IPR001005SANT/Myb domain
CDDcd001670.00645456514No hitNo description
Gene3DG3DSA:1.10.10.601.6E-9458516IPR009057Homeodomain-like
SuperFamilySSF466892.26E-6496574IPR009057Homeodomain-like
PROSITE profilePS500906.458518571IPR017877Myb-like domain
SMARTSM0071737522573IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MGRKEMTSLE FKSGKEKKKH KKKGKEEVNK DELERNFSVL EVGDKMGTNV VQTEDDNSGG  60
NHMISGEGAN KKKKRKREKD GDEMVIENMI DRKELFNEGE KSVGRTMGKL DSTGHVKKRK  120
KILEDVKKAM ATEYEDVAKI TNKGGNKKKK DKKQKKEKKV KKEKRENVDG ELGQNISSDG  180
IEAGVASKRV DGHIVEKGGL SLEKGRKEKR KHGKKSGTEL QESVAEDMGT DCNRKSEAVD  240
VENSKKGKKS KSQKHGIVEG CNEDKKKARS SKNSLKAQKG IGAPDNSEES APKKALKRVS  300
FSDDVEVFSP SDGPSDEHQD LVRGKRFSKE EDKIVEEAVL RYIDEHALGD DGLDMVLRCK  360
SHPEVKNHPE LKTCWKDIGA ALPWRPFKSV YYRAHILFER AEKRKWSPEE YEEVRKFHKD  420
KGADWRTLGD KLGKHRIHVK DAWRRIKLPN MKKGQWSQEE YENLFDLVNK DLRMKVFEEK  480
KTKHGMLRDN ICWEAISETL GTRTNAVCSL KWYNQLTSPL VSQKLWSDID DYRLLDALNS  540
LDACCIEDVD WDDLLEHRPG DVCQKRWYQM VKHIGQHALK SFPEQVEVLS KRYLADLIEA  600
REIYANKPAV D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17078KKKKRKREK
2116120KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21456.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291570.10.0PREDICTED: RNA polymerase I termination factor
RefseqXP_011459291.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A2P6QH270.0A0A2P6QH27_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004291570.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-125MYB_related family protein