PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21365.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 341aa    MW: 37927.1 Da    PI: 6.9174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21365.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.42.9e-23145205259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg +WrKYGqKe+ ++++pr+Y+rCt +   gC+++k+v+++++ pk+ ++tY g+H+++
  mrna21365.1-v1.0-hybrid 145 EDGQAWRKYGQKEILNAPYPRAYFRCTRKydqGCQATKQVQQTQDTPKLYKTTYIGNHTCR 205
                              8**************************998899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-23138206IPR003657WRKY domain
PROSITE profilePS5081120.38139202IPR003657WRKY domain
SuperFamilySSF1182901.06E-22142206IPR003657WRKY domain
SMARTSM007749.0E-35144206IPR003657WRKY domain
PfamPF031067.1E-23145205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MATTWLEALP AQHKRLIMNE LVHGRNRARE LQSLLNNRGH GSTSSRSEEE LVMEIVKSFS  60
ESLSVLSESS AKFGGDDQQY SGTTGCGGGE TVKAEQSHVE HSHCGDRSFE DSGESKKRPG  120
VKDRRGCYKR RKNSESWATV SSTVEDGQAW RKYGQKEILN APYPRAYFRC TRKYDQGCQA  180
TKQVQQTQDT PKLYKTTYIG NHTCRMIRAP QTIMGASHPP ALDSHAPPRA TVSSESGSTP  240
ICNKKEHHGD HGGHLSSSLS MIPFLPVKKE EPKEGTTTSS GLTDNLNDTS DMWPGFHFGF  300
PEAETTVLSD ENVVSNMQFL DMHLVKSIDD FEKFDFDQVY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-24138205269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115131KKRPGVKDRRGCYKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21365.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307738.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2H4G3800.0A0A2H4G380_FRAVE; WRKY transcription factor 56
STRINGXP_004307738.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-43WRKY DNA-binding protein 70