PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21364.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 346aa    MW: 38310.5 Da    PI: 6.4451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21364.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY888.3e-28177237259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqKe+ g +fpr+YYrCt++   +Cp+kk+v+r ++dp ++e++Y+g+H+++
  mrna21364.1-v1.0-hybrid 177 EDGFTWRKYGQKEIMGCRFPRGYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGDHTCH 237
                              7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26173238IPR003657WRKY domain
SuperFamilySSF1182908.76E-25174238IPR003657WRKY domain
SMARTSM007742.7E-35176238IPR003657WRKY domain
PfamPF031061.6E-25177237IPR003657WRKY domain
PROSITE profilePS5081120.094177239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDFRSETVS IIHHGCKLAR DLESNLPNLA NQPETVSKSL EEIIRVFGAA RERLQSSSAA  60
QQDPMSSYVH VAQQQQRFDA SLQEWLSRCN YTQAMEDHYI QTQRFAAEKS SAADSGAEAL  120
LQGQIHHAMD HIVTVISHEM NAASSSQSRP RRRRDHGEIR KLTVPAPRIG NTEIPPEDGF  180
TWRKYGQKEI MGCRFPRGYY RCTHQKLYNC PAKKQVQRLD NDPLTFEVMY RGDHTCHMSS  240
TAPSVLPASD DQIKQETMTQ THAATTTQPL GTWLSMDFNA GGEGSSGGGG RGDADGLATS  300
TTTTTTRYGK DVEFPVVDLA DAMFNSGSSS SNSMDFMFTS PMDNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-17177236968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21364.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308988.20.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A2P6SLU50.0A0A2P6SLU5_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308988.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-56WRKY DNA-binding protein 55