PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21047.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 379aa    MW: 41645.3 Da    PI: 4.6504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21047.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1878128155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+k+++g
  mrna21047.1-v1.0-hybrid  78 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAVDAALAYDEAAKAMYG 128
                              56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.36E-3178138No hitNo description
PfamPF008476.2E-1378128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-3079137IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1979134IPR016177DNA-binding domain
SMARTSM003801.4E-3579142IPR001471AP2/ERF domain
PROSITE profilePS5103221.07479136IPR001471AP2/ERF domain
PRINTSPR003671.8E-98091IPR001471AP2/ERF domain
PRINTSPR003671.8E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGAYNQGSNG FSQPLDSSRK RRRSKNDAGS VEETLSRWKE INRLKEAGIY GDKIRKVQSK  60
GSKKGCMKGK GGPENQRCNY RGVRQRTWGK WVAEIREPNR GSRLWLGTFP TAVDAALAYD  120
EAAKAMYGAN ARLNQPNVNN RNSYVSSWNE SSHETSSVTT PSGCSTVAKQ GCCESTTMSN  180
QSDHSEVCAE EESVKVKTED GEGELTSRAW SNAYTEPSAS NATQDVDVKS EVPMDHAHTD  240
QPGVQEQALD WIGFDVNYLN QFSLEELLFV DDLVGPTDDK PIPTLKLQQD TSSDVGRSQF  300
ADTAPVESAT PSNSSYQVQY PDGTTSGSVQ HMDQEPSVAD YGFDLLNLQL QDGNVGVDNH  360
RYFNMDDFDF HFPGGADN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1879136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822RKRRR
21823RKRRRS
31825RKRRRSKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21047.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307690.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_011469948.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A3S8T9840.0A0A3S8T984_FRAAN; Transcription factor ERF27
STRINGXP_004307690.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-32ERF family protein