PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20854.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 1023aa    MW: 112499 Da    PI: 9.2338
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20854.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-172731998
                             -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             p+ f+++++g+       +l+ ++g+sW+vkl  + k +++++ kGWk+F k+n L+ gDf+vF +dg+s+f   v++++
  mrna20854.1-v1.0-hybrid  2 PRAFVTHFNGP----ALCKLQGPTGKSWDVKL--EEKNNEIFFHKGWKKFLKDNFLDGGDFLVFNYDGDSCF--SVTIYD 73
                             88899766655....3579*************..**************************************..888876 PP
2B336.96.6e-121232041299
                              HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              k+ +l++p k +++  +++   ++ l l+d+++ sW v+   +  +++  ++t+GW + +kan+++eg ++vF++++   ++ +++
  mrna20854.1-v1.0-hybrid 123 KLYQLTIPIKIVRAKlQMS---KQILELRDPKNMSWPVTA--TPIPDGrLLMTTGWCDCCKANKIEEGHTIVFEFVK---GHVKLH 200
                              556799*****98886444...347***************..55555559************************876...555677 PP

                              EE-S CS
                       B3  96 vfrk 99 
                              +fr+
  mrna20854.1-v1.0-hybrid 201 IFRS 204
                              7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-17180IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.227175IPR003340B3 DNA binding domain
CDDcd100172.36E-15173No hitNo description
SMARTSM010193.9E-5275IPR003340B3 DNA binding domain
PfamPF023622.3E-14273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-17476IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-15108207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16108207IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.546112205IPR003340B3 DNA binding domain
CDDcd100171.48E-10113203No hitNo description
SMARTSM010191.0E-9115205IPR003340B3 DNA binding domain
PfamPF023623.4E-10123204IPR003340B3 DNA binding domain
SuperFamilySSF537205.02E-6228265IPR016161Aldehyde/histidinol dehydrogenase
Gene3DG3DSA:3.40.605.109.4E-5243265IPR016162Aldehyde dehydrogenase N-terminal domain
TIGRFAMsTIGR0109203301020IPR005766Delta l-pyrroline-5-carboxylate synthetase
Gene3DG3DSA:3.40.1160.101.6E-50337603IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.26E-56337602IPR001048Aspartate/glutamate/uridylate kinase
TIGRFAMsTIGR010273.7E-64337606IPR005715Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase
HamapMF_0045630.195337605IPR005715Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase
PfamPF006964.7E-39337582IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004746.3E-58374388IPR001057Glutamate/acetylglutamate kinase
PRINTSPR004746.3E-58418446IPR001057Glutamate/acetylglutamate kinase
PRINTSPR004746.3E-58458479IPR001057Glutamate/acetylglutamate kinase
PRINTSPR004746.3E-58497524IPR001057Glutamate/acetylglutamate kinase
PROSITE patternPS009020554571IPR019797Glutamate 5-kinase, conserved site
PRINTSPR004746.3E-58556576IPR001057Glutamate/acetylglutamate kinase
PfamPF001711.7E-6616878IPR015590Aldehyde dehydrogenase domain
HamapMF_0041230.8926161005IPR000965GPR domain
Gene3DG3DSA:3.40.605.102.2E-102617832IPR016162Aldehyde dehydrogenase N-terminal domain
SuperFamilySSF537201.21E-836171004IPR016161Aldehyde/histidinol dehydrogenase
CDDcd070791.50E-1786201001No hitNo description
Gene3DG3DSA:3.40.309.101.7E-16834962IPR016163Aldehyde dehydrogenase, C-terminal
Gene3DG3DSA:3.40.605.102.2E-1029631004IPR016162Aldehyde dehydrogenase N-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006561Biological Processproline biosynthetic process
GO:0009555Biological Processpollen development
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0042538Biological Processhyperosmotic salinity response
GO:0055114Biological Processoxidation-reduction process
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0004349Molecular Functionglutamate 5-kinase activity
GO:0004350Molecular Functionglutamate-5-semialdehyde dehydrogenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MPRAFVTHFN GPALCKLQGP TGKSWDVKLE EKNNEIFFHK GWKKFLKDNF LDGGDFLVFN  60
YDGDSCFSVT IYDESSCEMD MEVAKTKRSG GGRRRDHIWP GESRIIEFNS KHFCFKRTFT  120
KHKLYQLTIP IKIVRAKLQM SKQILELRDP KNMSWPVTAT PIPDGRLLMT TGWCDCCKAN  180
KIEEGHTIVF EFVKGHVKLH IFRSEGCNVI LIAVALIINR LVFGTHSHAS AVVSHNASSR  240
FSDGARFGLG AEVGISTSRI HAQGHGLLLT TKCHRRFSSK QRLHSLLRKK NPIKDRKKKE  300
QTPPSSTRLG FVDRVLTRRR EVMGDVDSSR GFLRDVKRIV LKVGTAVVTR KDGRIALGRL  360
GALCEQLKEL NTQGYEVILV SSGAVGLGRQ RLKYRKLINS SFADLQKPQV ELDGKACAAV  420
GQNCLMALYD TLFSQLDVSS AQLLVTDSDF RDRDFRKQLS DTVKSLLSLK VIPIFNENDA  480
VSTRRAPYED SSGIFWDNDS LAALLALELK ADLLVLLSDV EGLYSGPPSD PRSELIHTYI  540
KEKHQTEITF GDKSRVGRGG MTAKVKAAVN AAYAGIPVII TSGYAPENLT KVLQGERIGT  600
LFHQDAHLWC SVKDVDARGM AIAARESSRR LQAMTSEQRK KILLDIADAI EANAKKINVE  660
NEADVSAAQQ AGYEKSLVAR LALKPGKITS LANSVRVLAN MEDPIGHVLK KTELADGLVL  720
EKTSSPLGVL LIVFESRPDA LVQIASLAIR SGNGLLLKGG KEAKRSNAIL HKVITEAIPE  780
SVGGKLIGLV TSREEIPDLL KLDDVIDLVI PRGSNKLVSQ IKNSTKIPVL GHADGICHVY  840
VDKSANMDMA KQIVLDAKLD YPAACNAMET LLVHKDLMHT TPFNDLIVDL RSEGVTLYGG  900
PRASVFLHIP EAHSFHLEYS SLACTIDAHT ECIIAEDQEV VNAFFGQVDS AAVFHNASTR  960
FCDGARFGLG AEVGISTSRI HARGPVGVEG LLTTRWILKG SGQVVNGDKG IIYTHKDLPI  1020
EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2h5g_A1e-114624102038457Delta 1-pyrroline-5-carboxylate synthetase
2h5g_B1e-114624102038457Delta 1-pyrroline-5-carboxylate synthetase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtP5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20854.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307578.10.0PREDICTED: delta-1-pyrroline-5-carboxylate synthase
SwissprotO040150.0P5CS_ACTDE; Delta-1-pyrroline-5-carboxylate synthase
TrEMBLA0A2P6SKS10.0A0A2P6SKS1_ROSCH; Delta-1-pyrroline-5-carboxylate synthase
STRINGXP_004307578.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-15B3 family protein