PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20686.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 451aa    MW: 50321.9 Da    PI: 6.4082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20686.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1813e-56181431128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdee++++yL++k+ ++++++ ++i e+d++k+ePwdLp+k+k +e+ewyfF++rd+ky+tg r+nrat+sgyWkat
  mrna20686.1-v1.0-hybrid  18 LPPGFRFHPTDEEIITCYLTEKAVDSNFTA-TAIGEADLNKCEPWDLPNKAKMGEREWYFFCQRDRKYPTGMRTNRATESGYWKAT 102
                              79*************************999.88***************99999********************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              gkdke+++ +++lvg+kktLvfy+grapkgekt+Wvmheyrl
  mrna20686.1-v1.0-hybrid 103 GKDKEIFK-RKTLVGMKKTLVFYTGRAPKGEKTNWVMHEYRL 143
                              ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6415164IPR003441NAC domain
PROSITE profilePS5100559.02718163IPR003441NAC domain
PfamPF023652.6E-2919143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEEEGMVVNQ GHDELMALPP GFRFHPTDEE IITCYLTEKA VDSNFTATAI GEADLNKCEP  60
WDLPNKAKMG EREWYFFCQR DRKYPTGMRT NRATESGYWK ATGKDKEIFK RKTLVGMKKT  120
LVFYTGRAPK GEKTNWVMHE YRLHGNLSKS TKDEWVVCRV FHKNMGLKKT SSPLSPTDQG  180
AGGQLLRLNS FGDDFLDSSS LPPLMDPTPS YDKSAGSYSG YYGEHNDHDT KGNITAAPLS  240
IPAANKNTTP ADLQYYFEVG SSTRQMNRFQ LPNAAGSNQM SNPMATSTML YPQIHHHHQL  300
IPNPSFSFQP NNNLDYYLRQ EIRGPRTSIP NNQGSSFNFQ SSAIDHQVTL RAMAAAKNNH  360
HHIETSVTTA GSGGLDSRQC KLEQYSSNQS MFSVSQDTGL STADMNTTEI SSSVVTKQEI  420
EVGSSNTLYD DHLESPSVVP ISDIEGLWDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-571616915171NO APICAL MERISTEM PROTEIN
1ut4_B7e-571616915171NO APICAL MERISTEM PROTEIN
1ut7_A7e-571616915171NO APICAL MERISTEM PROTEIN
1ut7_B7e-571616915171NO APICAL MERISTEM PROTEIN
3swm_A6e-571616918174NAC domain-containing protein 19
3swm_B6e-571616918174NAC domain-containing protein 19
3swm_C6e-571616918174NAC domain-containing protein 19
3swm_D6e-571616918174NAC domain-containing protein 19
3swp_A6e-571616918174NAC domain-containing protein 19
3swp_B6e-571616918174NAC domain-containing protein 19
3swp_C6e-571616918174NAC domain-containing protein 19
3swp_D6e-571616918174NAC domain-containing protein 19
4dul_A7e-571616915171NAC domain-containing protein 19
4dul_B7e-571616915171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20686.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309786.10.0PREDICTED: NAC domain-containing protein 77-like
TrEMBLA0A2P6RHQ90.0A0A2P6RHQ9_ROSCH; Putative transcription factor NAM family
STRINGXP_004309786.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-99Arabidopsis NAC domain containing protein 87