PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20560.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 318aa    MW: 35377.6 Da    PI: 7.1503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20560.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.7e-33171227258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              +Dgy+WrKYGqK vk+s+fprsY+rCtsa+C+vkk+ver+ +dp++v++tYeg+H+h
  mrna20560.1-v1.0-hybrid 171 EDGYRWRKYGQKAVKNSPFPRSYFRCTSASCNVKKRVERCVNDPSIVVTTYEGQHTH 227
                              8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381308.0E-981316IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.6E-34155229IPR003657WRKY domain
SuperFamilySSF1182901.01E-28162228IPR003657WRKY domain
PROSITE profilePS5081130.458165230IPR003657WRKY domain
SMARTSM007743.0E-39170229IPR003657WRKY domain
PfamPF031064.4E-26171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKQDHLMKM EGNTRSSSFH ETTADYSYPF SGMFDFSQGD QKDSLGFMEL LGIQDYFCPA  60
NSLFDLPQIS VPPPQVLLPT TSITDVAKEY SVNPSTPNSS SISSASSEAV NEEPLTDNKA  120
AALQQEEDDD GDQPVPKKGS KANQKRKKTT EKKPRQPRFA FMTKSEVDHL EDGYRWRKYG  180
QKAVKNSPFP RSYFRCTSAS CNVKKRVERC VNDPSIVVTT YEGQHTHLSP LMSPPPPPAT  240
ALSSILMPRT LFSHYQQQQG LQPFEGNQTS NSCFATPNRS FLNERRFCSP AGGSALMTDH  300
GLLQDIVPSS MLKQVDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-251632301077Probable WRKY transcription factor 4
2lex_A3e-251632301077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20560.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288542.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-54WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2P6RFE91e-171A0A2P6RFE9_ROSCH; WRKY transcription factor
STRINGXP_004288542.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-44WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]