PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20500.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 428aa    MW: 48190.4 Da    PI: 4.1928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20500.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.73.9e-2291432128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiy.kvePwdLpkkvka.......eekewyfFskrdkkyatgkrknrat 78 
                               pG rF P d+elv +yLk+ ++g++++  ++v+ ++++y k ePw++ + +k+        +k++yfF+++++ ++t+kr +r +
  mrna20500.1-v1.0-hybrid   9 LPGQRFCPMDDELVLFYLKPMLSGENVPGgNRVVFDCELYgKQEPWEIWEDFKTrrphdlrLNKDIYFFTQHKTMSSTDKRIRRNV 94 
                              59************************77724569999988456*****753333223333335588******************** PP

                      NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               sg+Wk+  + kev+s  +g++vglkk L++   ++ + ++  W++ e+ l
  mrna20500.1-v1.0-hybrid  95 GSGTWKSDDSGKEVVSVeNGRVVGLKKRLTYK--NEDSVQNGCWILYEFFL 143
                              *******999999998769999*********8..45555699******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.1498165IPR003441NAC domain
SuperFamilySSF1019412.35E-248164IPR003441NAC domain
PfamPF023651.3E-1410141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEERRGNQLP GQRFCPMDDE LVLFYLKPML SGENVPGGNR VVFDCELYGK QEPWEIWEDF  60
KTRRPHDLRL NKDIYFFTQH KTMSSTDKRI RRNVGSGTWK SDDSGKEVVS VENGRVVGLK  120
KRLTYKNEDS VQNGCWILYE FFLDRSLRDK KQKMKDYVLC LLRKNGEPKT KIAKKRKQHE  180
EEEVLEDNDA CDDTEMSSGE QEELLEPQAK KQRTAPSTDN APPTVPSQDD VDAFAAELEE  240
TLECNEEDNA PSLEAEAICF RRQENVVGQQ PLAANHGTFN QLPEEDRFRE FLDRLSTEEM  300
EEMAEILSDG MSSNIDVAEQ NMVNSSTLVD APTSSMSAAY ECGTAMPYLS SENGCIDTSG  360
SNGVCGGLMG YEDGVCMPES LVEVATDEQQ NTADDGVSDL LGSIDFSPEA NKFICSEMQF  420
PSYSLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167176PKTKIAKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20500.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465406.10.0PREDICTED: uncharacterized protein LOC105351744
TrEMBLA0A2P6PAF80.0A0A2P6PAF8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306296.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.26e-17NAC domain containing protein 38