PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20254.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 25655.2 Da PI: 9.5333 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 133 | 155 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia +++ gRt++++k++w++ mrna20254.1-v1.0-hybrid 133 RWSLIAGRLP-GRTDNEIKNYWYT 155 6*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-7 | 128 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.168 | 129 | 157 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.30E-6 | 133 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 133 | 157 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-6 | 133 | 155 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDREGSSGLR LQIHALHRSS GERRPPQLIP PLRCYVHQGG NLGRIQVQAI LQSNADGGAG 60 FLPVFQCHNG AKRVGSWCIS KARPELLRPP CQSSSTIQIG LTVLSGMRPI RNSSSPDRLN 120 LVMRCCSSGV FLRWSLIAGR LPGRTDNEIK NYWYTRLSKK IQQKEKQSNN EANGTIQFPA 180 VDEKPSVAND DQKVHVEMKQ ECLAAAAGTS AALIKKEEVI DSEDYSNTYI NN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20254.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-13 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | mrna20254.1-v1.0-hybrid |