PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19867.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 294aa    MW: 32088.8 Da    PI: 6.2438
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19867.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.8e-341872155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  mrna19867.1-v1.0-hybrid 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1341575IPR017930Myb domain
SuperFamilySSF466896.45E-181672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-321773IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251873IPR006447Myb domain, plants
PfamPF002491.1E-92071IPR001005SANT/Myb domain
PfamPF143791.4E-10104140IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDNINGANSP SNSNLTSKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI  60
YHVKSHLQKY RLAKYLPDSS ADGGKADKKE PGDMLSNVDS SSGMQITEAL KLQMEVQRQL  120
QLRIEAQGKY LKKIIEEQQR LSGVLSEGPG PGNTLASGDN CRESDKVDPA TPAPTSECPI  180
QDKAIKERAP AKSLSIDESC SSRHDEPSTP DSGCHVISPA ESPDAERSLK KQKFSMGEAF  240
SNPEVVLTHQ ILESSLNSYQ QAHTHFVPRE QSNPTSDYSI RNVDLEQVAG SDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-241875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-241875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-241875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-241875158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19867.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285570.0FR828557.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb6 gene), cultivar Yellow Island.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293430.10.0PREDICTED: uncharacterized protein LOC101309129
SwissprotQ9SJW01e-115PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLF2QKX70.0F2QKX7_ROSHC; Putative MYB transcription factor
STRINGXP_004293429.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-117G2-like family protein