PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19817.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 689aa    MW: 79982.8 Da    PI: 6.1276
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19817.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.29.8e-2265156190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 
                              ++Y ++A++ GFsvrk++s+ s + g i+kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w v ++++
  mrna19817.1-v1.0-hybrid  65 EYYGNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKLTGDHHRDRKSVRCGCDAKMYLSKEVvdgVSQWIVVQFSN 149
                              59********************8888.*******************************************99867789******** PP

                     FAR1  84 eHnHela 90 
                               HnHel 
  mrna19817.1-v1.0-hybrid 150 VHNHELL 156
                              *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1965156IPR004330FAR1 DNA binding domain
PfamPF105516.4E-19289379IPR018289MULE transposase domain
PROSITE profilePS509669.817560595IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5569594IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-4570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MPSKNIWIRR QQCPCGDWKC YVTYEGDSEE TSLAAQLVKN DTSTSEAMVS PYVGMVFKND  60
DDAFEYYGNF ARRNGFSVRK ERSRLSPQLG IYKRDFVCYR SGFAPAKKKL TGDHHRDRKS  120
VRCGCDAKMY LSKEVVDGVS QWIVVQFSNV HNHELLEDDQ VRLLPAYRKI READQERILL  180
LSKAGFPIQR IVKVLELEKG IQGGQLPFLE RDVRNFVQNR KKVVQENDAL ITEKRENDTL  240
ELLEACKVTK EADEDFVYDF TVDENDKVEH IAWSYGHSVE AYTMFGDAVY FDTMYQSITY  300
GMLFGAWLGI DNHGRTVFFG CVLLQDETPR SFSWALQTFV RFMRGRWPQT IITDLDPGLR  360
DAITSKLPDT KHVISLWNIF PKVSSWFSVS LGSRYAEFRS ELDVLYRVES TEDFELQWNQ  420
MISIYGLSTD KHIALLHSFR ASWALCYMRG CFVARMGTTD YLKSIEAFLK GVFSTQTCLR  480
SFFEQVGISA SFQNQARREM QYMHTKTCIP IEENARSILT PFAFNALQHE LVLAMQYAVS  540
EMPNGSCIVR HFKEIDGERL VIWIPEDEHV HCSCKEFESS GLLCRHSLRV FILKNYFHLP  600
DKYYLNRWRR ETSLDFYDPQ IAQNCDDEWY QHYQCLAETL FTESSLTKER SEYVQREVTT  660
HLTSILNEVR NMPESEGIAM DLTFSPAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19817.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293388.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2P6Q2220.0A0A2P6Q222_ROSCH; Putative transcription factor FAR family
STRINGXP_004293388.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]