PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19428.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 465aa    MW: 52781.6 Da    PI: 9.6148
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19428.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.2e-32959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ss
  mrna19428.1-v1.0-hybrid  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFSS 59
                             79***********************************************96 PP
2K-box92.57.2e-31811701099
                    K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               ++++e +++e++kL+++ ++L r+qRhllGedL++Ls+keLq+Le+qLe +l+  R++K+++++eq+e+l+kke++l + n +Lr
  mrna19428.1-v1.0-hybrid  81 IKQETECWYEEVSKLRAKHDSLLRTQRHLLGEDLGPLSVKELQNLEKQLEGALTLARQRKTQIMIEQLEHLRKKERQLGDLNLQLR 166
                              47889********************************************************************************* PP

                    K-box  96 kkle 99 
                               kl+
  mrna19428.1-v1.0-hybrid 167 DKLQ 170
                              *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.908161IPR002100Transcription factor, MADS-box
CDDcd002654.99E-44274No hitNo description
SuperFamilySSF554551.18E-33286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-2683169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.90185175IPR002487Transcription factor, K-box
SuperFamilySSF522006.28E-41308459IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101406.1E-28315450IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010429.428316456IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002552.9E-38317456IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.6E-40318454IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFSSA  60
GMTQTLERYQ RSSYTPHDNP IKQETECWYE EVSKLRAKHD SLLRTQRHLL GEDLGPLSVK  120
ELQNLEKQLE GALTLARQRK TQIMIEQLEH LRKKERQLGD LNLQLRDKLQ KEGENLKAIQ  180
DFWSSNTVQA GNNNFLHSSQ AGHIDPPPEP ILQIGYQHYV AAESAYVPKT MAMAAETNFI  240
QGWKTQTKNP QSIGTKPAAR FRPSPRTPTT TALWFSMGQT TSASIPSSAD SVSLTSAAES  300
SSAASASFSS SSTPQSSYDV FLSFRGPDTR QGIVFELYDR LNNTRGVKTF KDDSDLEVGD  360
AISPTLLAAI EQSRFAIVVL SENYAASTWC LEELAKICQC MQDNRILPLF YHVDPTDVRY  420
QKKSFETAFN RHEKSRRHKT EKVKQWRDAL NKVANFSGWH TQNYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A1e-423114601147TIR-NB-LRR type resistance protein RPV1
5ku7_B1e-423114601147TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19428.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306877.11e-180PREDICTED: MADS-box transcription factor 6 isoform X1
SwissprotQ8LLR11e-127MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2P6SGD01e-161A0A2P6SGD0_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004306877.11e-179(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-97AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]