PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19321.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 653aa    MW: 72507.6 Da    PI: 5.2037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19321.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.3e-054614941755
                              HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              N+++  Lr+++P+      +  +Ka+iL  +++Y+k+L+
  mrna19321.1-v1.0-hybrid 461 NEKLMVLRSMVPSM-----TEIDKASILDDTIKYLKELE 494
                              8999*********8.....79***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5215197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.369444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-5460498No hitNo description
Gene3DG3DSA:4.10.280.103.7E-8461508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-8461506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT  60
VEGIEPKADK IGLQRNEQLR ELYKALLEGE STDQQAKVPS AALSPEDLTD AEWYYLLCMS  120
FVFNIGEGLP GRALANEKSI WLCNAQYADS KVFSRSLLAK SASIQTVVCF PYLGGVVELG  180
VTELVAEDPS LLQHIKASLL DFSKPDCSEK SSSAPHKADD DSDQFLANIV GHEIVDTLGL  240
ENLYSPSQEL KFDQSGINGL RGHDEEFSMG SADECSKGCE HNHQTDDSFM LEAVNGGASQ  300
VQSWHFMDDD FSNGFQDSMN SSDCISEAFV GKAHSSTIPE NKNHSHLKEL QNFNDTKFSS  360
LGLGPADDHL HYKQTVSAIL GSSMRIIGNP CFCSGDRKSS FVQWTKGAVH YCRPKAQQKL  420
LKKILFTVPL MMSGGSPSPQ KESTTNSKSE SDDVHEKLIE NEKLMVLRSM VPSMTEIDKA  480
SILDDTIKYL KELEARAEEM ESCMDTVEAI ARRKFLDRVK KASDNKTKTG NAKKPSINKR  540
KACDIDETDP ELNRLVSKES LPLDVNVSVK EQEVLIEMKC PYREYILLDI MDAVNSLYLD  600
AHSVQSSTLN DVLTLSLKSK VSSPKSSGQS FKVSRISNRT GGDDKTSALE NCW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-152719562227Transcription factor MYC3
4ywc_A1e-152719562227Transcription factor MYC3
4ywc_B1e-152719562227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19321.1-v1.0-hybrid
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1424170.0JX142417.1 Fragaria x ananassa transcription factor bHLH33 (bHLH33) mRNA, bHLH33-B allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308377.10.0PREDICTED: transcription factor EGL1
TrEMBLA0A2P6SHC40.0A0A2P6SHC4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308377.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-149bHLH family protein