PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18888.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 411aa    MW: 45853.4 Da    PI: 7.253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18888.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13204255155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR ++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  mrna18888.1-v1.0-hybrid 204 QRMTHIAVERNRRCQMNDHLNVLRSLMPPS---YIQRGDQASIVGGAIDFVKELE 255
                              79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-16194268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-12202259No hitNo description
PROSITE profilePS5088815.434203254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13204267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10209260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGFFVLPFSV LWRPFGFAVL RPRIHRHHHT HGLRFEEEEG AQYLSGLEDR MPFLQMLQSI  60
DFPPNFTPKE PSFQPLLRHH LNNTTTTAWP KMESTKNAQI HTLGELESCV TQDNQQQLYS  120
PANSEGQDPH QNNPLSGTVE VGGGGGGVVS SDCNQKLQQL NSAKMSPIQT QTHLTKTASS  180
PATRERQKRK RTRPTKNKEE VESQRMTHIA VERNRRCQMN DHLNVLRSLM PPSYIQRGDQ  240
ASIVGGAIDF VKELEQHLQS LEAQKRTRRA EGFTNTNVDP NNNNSMTSSS PSSSSTMTMP  300
SNGMFMSLSQ CRIGSTEEGN TCGDDGVTAQ NKSEAAEVDV TVIQTHVNLK VQCQKRPGQL  360
VRALVAIEDI RLTVLHLNIT SSEDEVLYSF NLKIEEGCKL GSADDIARAV H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204215RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18888.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469077.10.0PREDICTED: transcription factor bHLH57-like
SwissprotQ9M1286e-65BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A2P6SIV40.0A0A2P6SIV4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308405.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.15e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]