PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18635.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 37898.2 Da PI: 6.2736 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 8e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPt+eel+++yL+kkv+g++++l +vi+evd++k+ePwd ++k++ +++wyfFs++dkky+tg+r+nrat++g+W mrna18635.1-v1.0-hybrid 15 VPPGFRFHPTEEELLQYYLRKKVSGQRIDL-DVIREVDLNKLEPWDVQEKCNIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFW 99 69****************************.9***************964444222455*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk + s + +g++ktLvfykgrap+g+k+dW+mheyrl mrna18635.1-v1.0-hybrid 100 KATGRDKVIRS-NCLRIGMRKTLVFYKGRAPRGQKSDWIMHEYRL 143 *********99.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-58 | 9 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.452 | 15 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-28 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MTENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSGQ RIDLDVIREV DLNKLEPWDV 60 QEKCNIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIRS NCLRIGMRKT 120 LVFYKGRAPR GQKSDWIMHE YRLDDNTSRI TNVSVVVGEA DQEGGWVVCR IFKKKNLHRP 180 MLSATTSSIT TDTTRSTHQL LYNSCDADEG ALEHELKVME SRTCNGCKEE TNEANNSLFM 240 NHIHGFHDDV DRFFNLPSLQ SPDSSAENDD QVSHQRVDWV GLTNWAALDR FVASELDGRE 300 MMTYPESGNY FITDHHDFHD HELQLPTTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-52 | 9 | 176 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18635.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308279.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-124 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2P6SIR4 | 0.0 | A0A2P6SIR4_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004308279.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-111 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna18635.1-v1.0-hybrid |