PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18602.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 277aa    MW: 30861 Da    PI: 10.2976
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18602.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-09197223128
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIa 28 
                              r rWT+eE+ ++++a k++G   W +I 
  mrna18602.1-v1.0-hybrid 197 RERWTEEEHNRFLEALKLYGRA-WQRIE 223
                              78******************88.*9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.28E-7191224IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-9195225IPR006447Myb domain, plants
PfamPF002497.3E-6197223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5197225IPR009057Homeodomain-like
CDDcd001670.00153199222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MYTSSSPKRV SPRPFKTLVI VGYSGTRRPN RTYGPDLLTS ITSTLLIFPK SRPISDRSPS  60
NPFVVSFHVA VSTLATSAKS ATVRTVSPAT PGENRHVSGG PHRAQLETLL QTRELILCFE  120
IFRIKFRSLR CRKLCLRRRV CGDDSGWCFS HELSSAAPWK RGFEAALSCA SPVMDTFSAG  180
EDLIIKARKP YTITKQRERW TEEEHNRFLE ALKLYGRAWQ RIEESGVTNA AASSPEETKI  240
CVVDFESASE EEAGAVGGGE EEAGGSRRRR GRSRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18602.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.19e-26circadian clock associated 1