PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18499.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 541aa    MW: 60876.1 Da    PI: 4.499
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18499.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.27.2e-1111625331374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl 83 
                              lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+  +f+ +L++rl+  +  +l  +++  + + +    +e+l a++l
  mrna18499.1-v1.0-hybrid 162 LVHMLLACAEAVGCRDTRLAESLLTQIWASVSPFGDSLQRVSYCFAMGLKSRLSLlQNVNLNGTFNNDTMDVSMiaREEKLEAFQL 247
                              689**************************************************996666777777777766555778999****** PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakf 168
                              +++++P++ f++++aN+aI +a++g+e +HiiD+++++ lQWp+Ll++LasRpegpp +lRiTg+++   ++  ele+  + L + 
  mrna18499.1-v1.0-hybrid 248 LYQTTPYIAFGFMVANEAICQAAQGKESLHIIDLGMEHTLQWPSLLRTLASRPEGPPkKLRITGLVE--DDNVFELEAGMRVLVEE 331
                              *****************************************************988889********..5599************* PP

                     GRAS 169 Aeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                              A++lg+p+efn++ +  + + l+ e+L++++gEal Vn++++lhr ++es  + +   ++L+++k+lsP v+++veq+a+hn++ F
  mrna18499.1-v1.0-hybrid 332 ASSLGIPMEFNMISEPvKPSLLTKENLDLREGEALCVNSIMHLHRYVRESRGSLK---AILQALKKLSPSVLTLVEQDANHNGPFF 414
                              ************744358999**************************87776666...9*************************** PP

                     GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                              l rfle+l++ysa+fdsle++lpr+s +r+k+Er  ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa++
  mrna18499.1-v1.0-hybrid 415 LGRFLESLHFYSAIFDSLEVSLPRNSPQRTKIERLHFADEIRNIVAFEGLNRVERHERADQWRRQLGRAGFQVMGLK--CTSQARM 498
                              *************************************************************************9996..679**** PP

                     GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +l+ ++ dgy++ +e+g+l+lgWk+rp++ + aW+
  mrna18499.1-v1.0-hybrid 499 MLSVYGCDGYSLASEKGCLLLGWKGRPIMLAAAWQ 533
                              **********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.023136515IPR005202Transcription factor GRAS
PfamPF035142.5E-108162533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEDFNAWLSF PIHENLNHDL AIRRFCPARL EQEQGGGEWE EILNEIEFCS PSYDSTTTPC  60
LPASEVDEFV DSIINMDHCK DVNDDYHQSL EKQQSSFDYF QDGMQTFSME DDLYGDVMMM  120
MEGDDQMEMC GTVEDFGVVD DQTSMVPSIE EVSHGVDQGL HLVHMLLACA EAVGCRDTRL  180
AESLLTQIWA SVSPFGDSLQ RVSYCFAMGL KSRLSLLQNV NLNGTFNNDT MDVSMIAREE  240
KLEAFQLLYQ TTPYIAFGFM VANEAICQAA QGKESLHIID LGMEHTLQWP SLLRTLASRP  300
EGPPKKLRIT GLVEDDNVFE LEAGMRVLVE EASSLGIPME FNMISEPVKP SLLTKENLDL  360
REGEALCVNS IMHLHRYVRE SRGSLKAILQ ALKKLSPSVL TLVEQDANHN GPFFLGRFLE  420
SLHFYSAIFD SLEVSLPRNS PQRTKIERLH FADEIRNIVA FEGLNRVERH ERADQWRRQL  480
GRAGFQVMGL KCTSQARMML SVYGCDGYSL ASEKGCLLLG WKGRPIMLAA AWQVNNASSS  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6216953225377Protein SCARECROW
5b3h_D2e-6216953225377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18499.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306565.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P6Q8A00.0A0A2P6Q8A0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004306565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-81RGA-like 1