PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18432.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 662aa    MW: 73561.1 Da    PI: 9.0345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18432.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08568617147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  mrna18432.1-v1.0-hybrid 568 RRPFSVSEVEALVQAVEKLGTGRWRDVKMHAFdnaKHRTYVDLKDKWKTL 617
                              678999*********************999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.347563622IPR017930Myb domain
SMARTSM007174.0E-8567620IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10568618IPR009057Homeodomain-like
SuperFamilySSF466894.73E-16569650IPR009057Homeodomain-like
CDDcd116604.76E-17569619No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVPQRKVDYG FNGYQMPEVP RASRSARGKG PIRKKLEDNQ IHAFEILASV AGKLLESENP  60
LPSNASCGKD PHYMVDDIIG KQQTEGNSLK EELCELGSWE DEASQLACGV QGHQQSHTLN  120
QFSHPQENFS FEMSATSKSN DHLGKVCFAK KLGTVDSSSS CGSYSNKVIS DCPLSGDLID  180
EEEKAHAVQK RKLEAEPSKD TNIKDANAHV LVCSEDWIEM KGNPPELVSS EHDVKEPFSG  240
DCKIHGSFLC HCVKVISRDD DENSVGYVQP CTIIEEFEHK PNVGDRKIKN MSASKRWRIA  300
PDMKIGGYHR TDGKVYRNGR PCYAHQRSQK NYPFKKRKFF NQKPFATSDR DCNCENIVSS  360
PDNREDGGNC NAGLMLIALL HAASGRSSSA TGREPLKSSD RNVRLSIKSF KVPELFFEIP  420
ATATVGSLKG KKVRDDNKTL LQTGISHDDK LDNLGFSLEP KHTKLMYSQC GDDPSSVSGR  480
RQELIRHSSL VSRPRTSNIS LNPPIINLGS SVDKDLKAVL PPASTSIDKS PPVSQALVAV  540
PPITAKPLAV VPFHRRSGHS AYVQRRMRRP FSVSEVEALV QAVEKLGTGR WRDVKMHAFD  600
NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLAAHAYWSQ RQAKQQLRVA  660
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-525526571106Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328337QKNYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18432.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302721.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011466551.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011466552.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A2P6RA030.0A0A2P6RA03_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004302721.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.17e-91TRF-like 2